View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17882_low_31 (Length: 249)
Name: NF17882_low_31
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_31 |
 | |
|
| [»] scaffold1813 (1 HSPs) |
| | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0916 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12028109 - 12027887
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
12028109 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaaattgatgttataatgtttggtttttgttggcat |
12028010 |
T |
|
| Q |
101 |
tgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12028009 |
tgttgtttacagtaggtttaggtacaatgtagttgaatttgatgttgaattaacattaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
12027910 |
T |
|
| Q |
201 |
atgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
12027909 |
atgcctaagtgaaataatcttgc |
12027887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 31302574 - 31302786
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31302574 |
ttttcataattttagcaaaatgttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttgttttttgctggcattg |
31302673 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31302674 |
ttgtttagagtaggtttaagtacaatgcagttgaatttgatattgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
31302773 |
T |
|
| Q |
203 |
gcctaagtgaaat |
215 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31302774 |
tcctaagtgaaat |
31302786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 54603957 - 54603737
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| ||||||| |||||| |||| | |||| |||||||||| |
|
|
| T |
54603957 |
ttttcataattttagcaaaatgtttagggtttaggttaggtttaaaattt-caaattatgatagaattagatgttgtaattgattgtttatgctggcatt |
54603859 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54603858 |
gttgtttagagtaggtttgggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
54603759 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
54603758 |
tgcctaagtgagaaaatcttgc |
54603737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 55741211 - 55741001
Alignment:
| Q |
1 |
agttttcataatttt-agcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||| || || |||| | | || | |||| ||||| | |
|
|
| T |
55741211 |
agttttcataattttgagcaaaatgttagt-tttaggttaggttagaaaattgcaaattatgcatgatttagatgatttgattgattgtttatgctgtaa |
55741113 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|| ||||||| |||| | ||||||||||||||||| || |||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
55741112 |
ttcttgtttagagtaaatgtaggtacaatgtagttgt-ttagatgtttaaataacactaattgtgctagtaatttataatgcacttaaggtgtttgatga |
55741014 |
T |
|
| Q |
200 |
aatgcctaagtga |
212 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55741013 |
aatgcctaagtga |
55741001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 39390518 - 39390449
Alignment:
| Q |
141 |
gatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagt |
210 |
Q |
| |
|
|||||| || |||||||| ||||||| || ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
39390518 |
gatgttcaaataacactagttgtgctcctaatttagaatgcagataaggtgtttgatgaaatgcctaagt |
39390449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 53562261 - 53562041
Alignment:
| Q |
2 |
gttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562261 |
gttttcataattttagcaaaatgttaatgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
53562162 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562161 |
attgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
53562062 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttg |
222 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
53562061 |
tgcctaagcgaaataatcttg |
53562041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 18895461 - 18895682
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||| |||||| |||| | |||| || || |||| |
|
|
| T |
18895461 |
ttttcataattttagcaaaatgtttagggtttaggttaggtttgaaaattgcaaattatgatagaattagatgttgtaattgattgtttatgttgacatt |
18895560 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18895561 |
gttgtttagagtaggtttaggtacagtgtagttgaatttgatgttgatttaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
18895660 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
18895661 |
tgcctaagtgagaaaatcttgc |
18895682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4950660 - 4950452
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
|
|
| T |
4950660 |
ttttcataattttagcaaaacgttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtagggtttttgttgacattg |
4950561 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4950560 |
ttgtttagagtaggtttaggtacaatgtagttg------------aattaacaataattgtgctagtactttaaaatgcacttaaggtgtttgatgaaat |
4950473 |
T |
|
| Q |
203 |
gcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
4950472 |
acctaagagaaataatcttgc |
4950452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 55146873 - 55147083
Alignment:
| Q |
1 |
agttttcataatttt-agcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
||||||||||||||| ||| ||| ||||| ||||||||||||| |||||| |||||| | || || |||||| ||| || | |||| |||||| | |
|
|
| T |
55146873 |
agttttcataattttgagccaaatgttagt-tttaggttaggttaggaaattgaaaattaaacttgatttagatgttttaaagtattgtttatgctggaa |
55146971 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|||||||||| ||| | |||||||||||||| || |||||| || |||||||| ||||||| || ||| || |||| ||||||||||||||| |
|
|
| T |
55146972 |
ttgttgtttagtgtaaatgtaggtacaatgtagccct-ttagatgttcaaataacactagttgtgctcctaatttagaacgcacataaggtgtttgatga |
55147070 |
T |
|
| Q |
200 |
aatgcctaagtga |
212 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55147071 |
aatgcctaagtga |
55147083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 30716364 - 30716397
Alignment:
| Q |
179 |
tgcacttaaggtgtttgatgaaatgcctaagtga |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
30716364 |
tgcacataaggtgtttgatgaaatgcctaagtga |
30716397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 13706413 - 13706633
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
13706413 |
ttttcataattttagcaaaatgttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgttgggtttttgctgacattg |
13706512 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
13706513 |
ttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtactagtattttaaaatgcacttaaggtgtttggtgaaat |
13706612 |
T |
|
| Q |
203 |
gcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
13706613 |
gcctaagcgaaataatcttgc |
13706633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 42058395 - 42058186
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42058395 |
ttttcataggtttagcaaaatgttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
42058296 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42058295 |
ttgtttagagtaggtttaagtacaatgtagtagaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
42058196 |
T |
|
| Q |
203 |
gcctaagtga |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
42058195 |
gcctaagtga |
42058186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31385634 - 31385856
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaa-aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31385634 |
agttttcataattttagcaaaactttagtgtttaggttaggtttttgaaattgcaaattatgttagaatttgatgttataatgtagggtttttgctggca |
31385733 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
31385734 |
ttgttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaattcacataaggtgtttgatga |
31385833 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttg |
222 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
31385834 |
aatgcctaagtgagaaaatcttg |
31385856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 15292549 - 15292340
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15292549 |
ttttcataattttagcaaaatgttagtatttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
15292450 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15292449 |
ttgtttagagtaggtttaagtacaatgtagtagaatttgatattgaattaacactaattgtgctagtattttaaaatgcacttaaggtgtttgatgaaat |
15292350 |
T |
|
| Q |
203 |
gcctaagtga |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
15292349 |
gcctaagtga |
15292340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42465099 - 42464876
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaa-aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42465099 |
agttttcataattttagcaaaattttagtgtttaggttaggtttttgaaattgcaaattatgttagaatttgatgttataatgtagggtttttgctggca |
42465000 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42464999 |
ttattgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatga |
42464900 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||| | |||||||| |
|
|
| T |
42464899 |
aatgcctaagtgagaaaatcttgc |
42464876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 46200936 - 46200715
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |||| | |||| ||||||||| |
|
|
| T |
46200936 |
ttttcataattttagcaaaatgtttagggtttaggttagatttaaaaattgcaaattatgatagaattagatgttgtaattgattgtttaggctggcatt |
46200837 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
46200836 |
gttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcactttagatgtttgatgaaa |
46200737 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46200736 |
tgcctaagtgaaataatcttgc |
46200715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 18239767 - 18239987
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| ||||| |||| |
|
|
| T |
18239767 |
tttttataattttagcaaaatgtttag-gtttaggttaggtttaaaaattgcaaattatgatagaattagatgttgtaattgattttttatgctgacatt |
18239865 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18239866 |
gttgtttagagtaggtttaggtacaatgtagttgaatttaatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
18239965 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
18239966 |
tgcctaagtgagaaaatcttgc |
18239987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 8643747 - 8643862
Alignment:
| Q |
98 |
cattgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgat |
197 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||| | | || ||||||||| | |||||||||||| |
|
|
| T |
8643747 |
cattgttgtttagagtaggtttagatacaatgtggttgt-tttgaagtttaattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgat |
8643845 |
T |
|
| Q |
198 |
gaaatgcctaagtgaaa |
214 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8643846 |
aaaatgcctaagtgaaa |
8643862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7250356 - 7250566
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7250356 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcat |
7250455 |
T |
|
| Q |
101 |
tgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7250456 |
tgttgtttaaagtaggtttaggtacaatgta------------gttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
7250543 |
T |
|
| Q |
201 |
atgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
7250544 |
atgtctaagtgaaataatcttgc |
7250566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42449773 - 42449552
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
42449773 |
agttttcataattttagcaaaactttagtgtttaggttaggttttgaaattgcaaattatgttagaatttgatgttataatgtagggtttttgttggcat |
42449674 |
T |
|
| Q |
101 |
tgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
200 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
42449673 |
tattgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacact-attgtgctagtattttgaaatgcacataaggtgtttgatgga |
42449575 |
T |
|
| Q |
201 |
atgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
42449574 |
atgcctaagtgagaaaatcttgc |
42449552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 23062506 - 23062715
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23062506 |
ttttcataattttagcaaaatgttattgtttaggttaggtttaaaaattgtaaattatgttagaatttgatgttataatgtttgatttttgctggcattg |
23062605 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23062606 |
ttgtttagagtaggtttaagtacaatgtagtagaatttgatgatgaattaacactaattgtgctaatattttgaaatgcacttaaggtgtttgatgaaat |
23062705 |
T |
|
| Q |
203 |
gcctaagtga |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
23062706 |
gcctaagtga |
23062715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10826821 - 10826598
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaa-aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10826821 |
agttttcataattttagcaaaactttagtgtttaggttaggtttttgaaattgcaaattatgttagaatttgatgttataatgtagagtttttgctggca |
10826722 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
10826721 |
ttgttgtttagagtaggtttaggtacaatgtagttcaatttgacgttgaattaacactaattgtgcaagtattttgaaatgcacataaggtgtttgatga |
10826622 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||| | |||||||| |
|
|
| T |
10826621 |
aatgcctaagtgataaaatcttgc |
10826598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 19870926 - 19870987
Alignment:
| Q |
151 |
taacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtga |
212 |
Q |
| |
|
|||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19870926 |
taacactagttgtgcccctattttagaatgcacataaggtgtttgatgaaatgcctaagtga |
19870987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 45414572 - 45414792
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||| ||||||||| |
|
|
| T |
45414572 |
ttttcataattttagcaaaatgttagtgcttaggttaggtttaaaaattgcaaattatgttagattttgatataataatgtagggtttttactggcattg |
45414671 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
45414672 |
ttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaaataacactaattgtgctagtattttaaaatgcacttaaagtgtttgatgaaat |
45414771 |
T |
|
| Q |
203 |
gcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45414772 |
gcctaagtgaaataatcttgc |
45414792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 17733829 - 17733608
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||| |||||| |||| | |||| |||||||||| |
|
|
| T |
17733829 |
ttttaataattttagcaaaatgtttagggtttaggttaggtttaaaatttgcaaattatgatagaattagatgttgtaattgattgtttatgctggcatt |
17733730 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17733729 |
gttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgattgatgaaa |
17733630 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|| |||||||| | |||||||| |
|
|
| T |
17733629 |
tgtctaagtgagaaaatcttgc |
17733608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 31592660 - 31592870
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||| | |||| |||||||||| |
|
|
| T |
31592660 |
ttttcataattttagcaaattgtttagggtttaggttaggtttaaaaattgcaaattattatagaattagatgttgtaattgattgtttatgctggcatt |
31592759 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31592760 |
gttgtttagggtaggtttaggtgcaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
31592859 |
T |
|
| Q |
202 |
tgcctaagtga |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
31592860 |
tgcctaagtga |
31592870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 13953156 - 13953005
Alignment:
| Q |
71 |
gatgttataatgtttggtttttgctggcattgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagta |
170 |
Q |
| |
|
|||||| |||||| | |||| |||| | ||||||||||| |||| || |||||||||||||||| || |||||| || |||||||||||||||||||| |
|
|
| T |
13953156 |
gatgttttaatgtattgtttatgctagaattgttgtttagagtaagtgcaggtacaatgtagttgt-ttagatgttcaaataacactaattgtgctagta |
13953058 |
T |
|
| Q |
171 |
ttttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
13953057 |
atttgaaatgcacttaaggtgtttgatgaaatgcctaagagagaaaatcttgc |
13953005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 28510500 - 28510321
Alignment:
| Q |
31 |
tttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgttgtttaaagtaggtttaggtacaatgt |
130 |
Q |
| |
|
|||||||| |||| ||||||||||||||| | || || |||||| |||||| | ||| ||||||| ||||||| ||| |||| || |||||||| || |
|
|
| T |
28510500 |
tttaggtttggttaaaaaattgcaaattaagcatgatttagatgttttaatgtattgttgttgctggaattgttgattagagtaagtataggtacaccgt |
28510401 |
T |
|
| Q |
131 |
agttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtg |
211 |
Q |
| |
|
||||| || |||||| || |||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
28510400 |
agttgt-ttagatgttcaaataacactaattgtgttagtaatttagaatgcacttaaggtgtttcatgaaatgcctaagtg |
28510321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 3938886 - 3938978
Alignment:
| Q |
119 |
taggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtga |
212 |
Q |
| |
|
||||||||||||||||| || || |||||| | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3938886 |
taggtacaatgtagttgt-ttagaagttgaaatttcactaattgtgctagtaatttagaatgcacttaaggtgtttgatgaaatgcctaagtga |
3938978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1813 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold1813
Description:
Target: scaffold1813; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 617 - 410
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
617 |
ttttcataattttagcaaaatgttagtgtttaggttaggtttaaaaattgcaaattatgtta-------------taatgtttggtttttgctggcattg |
531 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
530 |
ttgtttagagtaggtttagatacaatgtagttgaatttgatgttgaattaacagtaattgtgctagtattttaaaatgcacttaaggtgtttaatgaaat |
431 |
T |
|
| Q |
203 |
gcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
430 |
gcctaagtgaaataatcttgc |
410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 2121044 - 2120857
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
2121044 |
ttttcataattttagcaaaatgttagtgtttaggttagatttaaaaattgcaaattatgtta--------tgttataatgtttggtttttgctgacattg |
2120953 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2120952 |
ttgtttaaagtaggtttaggtacaatgtatttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatg |
2120857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26170713 - 26170935
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaa-aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26170713 |
agttctcataattttagcaaaactgtagtatttaggttaggtttttgaaattgcaaattacgatagaatttgatgttataatgtatggttcttgctggca |
26170812 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
26170813 |
ttattgtttagagtaggtttaggtacaatgcagttgaatttaatgttgaatcaacactaattgtgctagtaatttgaaatgcacttaaggtatttgatga |
26170912 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttg |
222 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
26170913 |
aatgcctaagtgagataatcttg |
26170935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 31509170 - 31508994
Alignment:
| Q |
47 |
aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgtt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
31509170 |
aaattgcaaattatgttagaatttgatgttataatgtagggtttttgttggcattgttgtttagagtaggtttaggtacaatgtagttgaatttgatttt |
31509071 |
T |
|
| Q |
147 |
gaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
31509070 |
gaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaattcctaagtgagaaaatcttgc |
31508994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 34457273 - 34457477
Alignment:
| Q |
15 |
tagcaaaactttagtgtttaggttaggtttaaaaa-ttgcaaattat-gttagaatttgatgttataatgtttggtttttgctggcattgttgtttaa-a |
111 |
Q |
| |
|
|||||||| ||||| ||||||||| |||||||| || |||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||| | | |
|
|
| T |
34457273 |
tagcaaaatgttagtatttaggttacatttaaaaaatttcaaatttttgttagaatttgatgttataatgtagggtttttgctggcattgtttttttaga |
34457372 |
T |
|
| Q |
112 |
gtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34457373 |
gtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttaaaatgcacttaaggtgtttgatgaaatgcctaagtg |
34457472 |
T |
|
| Q |
212 |
aaata |
216 |
Q |
| |
|
||||| |
|
|
| T |
34457473 |
aaata |
34457477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 21831350 - 21831567
Alignment:
| Q |
5 |
ttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgtt |
104 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||||| ||||| ||||| | |||| ||||||||||||| |
|
|
| T |
21831350 |
ttcataattttagcaaaatgttagtggttaggttaggtttagaaattgcaaattatgatagaatttaatgttgtaatggattgtttatgctggcattgtt |
21831449 |
T |
|
| Q |
105 |
gtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgc |
204 |
Q |
| |
|
| ||| |||| |||||||||||||||||||| || | |||| || || |||||||| ||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
21831450 |
gcttagagtaagtttaggtacaatgtagttg-tttagttgttcaaatagcactaattctgctactaatttagaatgcacttaaggtgtttgatgaaatgc |
21831548 |
T |
|
| Q |
205 |
ctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
21831549 |
ctaagtgagataatcttgc |
21831567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19508125 - 19508346
Alignment:
| Q |
1 |
agttttcataatttt-agcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||| |||||||| ||||||| ||||| ||||||||||||| |||||||||||||||| || || |||| | | ||| | |||| |||||| | |
|
|
| T |
19508125 |
agtttttataattttgagcaaaatgttagt-tttaggttaggttagaaaattgcaaattatgcatgatttagatgctttgatggattgtttatgctggaa |
19508223 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
||| |||||| |||| || | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19508224 |
ttgatgtttagagtaagtgttggtataatgtagttgaatttgatgttgaaataacactaattgtgctagtattttgaatagcacttaaggtgtttgatga |
19508323 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttg |
222 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
19508324 |
aatgcctaagtgagagaatcttg |
19508346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 29899512 - 29899632
Alignment:
| Q |
91 |
ttgctggcattgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggt |
190 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||| ||||| | | ||||| || |||||||||||||||| || ||| ||||| | |||||| |
|
|
| T |
29899512 |
ttgctgacattgttatttagagtaggtttaggtacaatgcagttgtttat-atgttcaaataacactaattgtgctcctaatttagaatgcgcataaggt |
29899610 |
T |
|
| Q |
191 |
gtttgatgaaatgcctaagtga |
212 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29899611 |
gtttgatgaaatgcctaagtga |
29899632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 40614497 - 40614287
Alignment:
| Q |
1 |
agttttcataatttt-agcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| | || || |||||| ||| || | |||| |||||| | |
|
|
| T |
40614497 |
agttttcataattttgagcaaaatattagt-tttaggttaggttagaaaattgaaaattaagcatgatttagatgttttaaagtattgtttatgctggaa |
40614399 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|||||||||| |||| | ||||||||||||| || |||||| || ||||| |||||||||| || ||| ||||||| ||||||||||||||| |
|
|
| T |
40614398 |
ttgttgtttatagtaaatgtaggtacaatgtaaccct-ttagatgttcaaataacattaattgtgctcctaatttagaatgcacataaggtgtttgatga |
40614300 |
T |
|
| Q |
200 |
aatgcctaagtga |
212 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40614299 |
aatgcctaagtga |
40614287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29899452 - 29899495
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggttt |
44 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29899452 |
agttttcataattttagcataactttagtgtttaggttaggttt |
29899495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 13567174 - 13567061
Alignment:
| Q |
99 |
attgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatg |
198 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||| ||||| |||||||| |||| ||||||| ||| || | |||||| ||||||||||||| |
|
|
| T |
13567174 |
attgttgtatagagtaggtttaggtacaatgtggttg-ttttgaagttgaatttacacaaattgtgacagttttatattttgcactcaaggtgtttgatg |
13567076 |
T |
|
| Q |
199 |
aaatgcctaagtgaa |
213 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13567075 |
aaatgtgtaagtgaa |
13567061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 1815 - 1606
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||| |||||| |||| | |||| |||||||||| |
|
|
| T |
1815 |
ttttcataattttagcaaaatgtttagggtttatgttaggtttaaaaattgcaaattattatagaattagatgttgtaattgattgtttatgctggcatt |
1716 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1715 |
gttgtttacagtaggtttaggtataatgtagttgaatttgatgttgaattaacattaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
1616 |
T |
|
| Q |
202 |
tgcctaagtg |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
1615 |
tgcctaagtg |
1606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 28407 - 28186
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| ||||| |||| |
|
|
| T |
28407 |
ttttcataattttagcaaaatgtttagggtttaggttaggtttaaaaattgcaaattatgatagaattagatgttgtaattgattttttatgctgacatt |
28308 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28307 |
gttgtttagagtaggtttaggtacaatttagttgaatttgacgttgaataaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
28208 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
28207 |
tgcctaagtgagaaaatcttgc |
28186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 44437 - 44658
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcatt |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| ||||| |||| |
|
|
| T |
44437 |
ttttcataattttagcaaaatgtttagggtttaggttaggtttaaaaattgcaaattatgatagaattagatgttgtaattgattttttatgctgacatt |
44536 |
T |
|
| Q |
102 |
gttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaa |
201 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44537 |
gttgtttagagtaggtttaggtacaatttagttgaatttgacgttgaataaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaa |
44636 |
T |
|
| Q |
202 |
tgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
44637 |
tgcctaagtgagaaaatcttgc |
44658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 20495291 - 20495083
Alignment:
| Q |
5 |
ttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgt |
103 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| |||||||||||| |||||||| ||||||| |||||| |||| | ||| || ||||||||| |
|
|
| T |
20495291 |
ttcataattttagcaaaatgtttatggtttaggttaagtttaaaaattgtaaattatgatagaattagatgttgtaattgattttttatgttggcattgt |
20495192 |
T |
|
| Q |
104 |
tgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatg |
203 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20495191 |
tgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatgaaatg |
20495092 |
T |
|
| Q |
204 |
cctaagtga |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
20495091 |
cctaagtga |
20495083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 42100510 - 42100288
Alignment:
| Q |
3 |
ttttcataattttagcaaaac-tttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataa-tgtttggtttttgctggcat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||||| ||||||||||||||||||||| ||||||| |||||| ||| || ||| ||| || | |||| |
|
|
| T |
42100510 |
ttttcataattttagcaaaatgtttagggtt-aggttatgtttaaaaattgcaaattatgatagaattagatgttgtaagtgattg-tttatgtttgcat |
42100413 |
T |
|
| Q |
101 |
tgttgtttaaagtaggtttaggtacaatgtagttgaattt--gatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatg |
198 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42100412 |
tgttgtttatagtaggtttaggtacaacgtagttgaatttttgatgttgaattaacactaattgtgctagtattttgaaatgcacataaggtgtttgatg |
42100313 |
T |
|
| Q |
199 |
aaatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
42100312 |
aaatgcctaagtaaaataatcttgc |
42100288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44119167 - 44118956
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaa-aaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
44119167 |
agttttcatagttttagcaaaactttagtgtttaggttaggtttttgaaattgaaaattatgttagaatttgatgttataatgtagggtttttgttggca |
44119068 |
T |
|
| Q |
100 |
ttgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatga |
199 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
44119067 |
ttgttgtttagagtaggtttaggtacaatgtagttg------------aattaacaccaattgtgctagtattttgaaacgcacaaaaggtgtttgatga |
44118980 |
T |
|
| Q |
200 |
aatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||||||||||||| | |||||||| |
|
|
| T |
44118979 |
aatgcctaagtgagaaaatcttgc |
44118956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 23718465 - 23718260
Alignment:
| Q |
3 |
ttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| | |||| | ||| ||||| |
|
|
| T |
23718465 |
ttttcataattttagcaaaatgttagtgttgaggttaggtttaaaaattgcaaattattatagaatttgatgttgtaatggattgtttattctgacattg |
23718366 |
T |
|
| Q |
103 |
ttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaat |
202 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| || |||||| || ||||||||||| |||| || ||| ||||| ||||||||||||||||||||| |
|
|
| T |
23718365 |
ttgtctagagtaggtttaggtacaatgtagttg-tttagatgttcaaataacactaattatgctcctaatttaaaatgtacttaaggtgtttgatgaaat |
23718267 |
T |
|
| Q |
203 |
gcctaag |
209 |
Q |
| |
|
||||||| |
|
|
| T |
23718266 |
gcctaag |
23718260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 21551473 - 21551295
Alignment:
| Q |
35 |
ggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgtt-gtttaaagtaggtttaggtacaatgtagt |
133 |
Q |
| |
|
||||||||| | |||| ||||||| | | || |||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21551473 |
ggttaggttagagaatttcaaattaagcttgattttgatgttataatgtatggttgttgctcgcattgtttgtttagagtaggtttaggtacaatgtagt |
21551374 |
T |
|
| Q |
134 |
tgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaa |
213 |
Q |
| |
|
|| || ||||||||| ||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21551373 |
tgt-ttagatgttgaaataacactaactgtgctagtaatttggaatgcactcaaggtgtttgatgaaatgcctaagtgaa |
21551295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 21552519 - 21552341
Alignment:
| Q |
35 |
ggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgtt-gtttaaagtaggtttaggtacaatgtagt |
133 |
Q |
| |
|
||||||||| | |||| ||||||| | | || |||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
21552519 |
ggttaggttagagaatttcaaattaagcttgattttgatgttataatgtatggttgttgctcgcattgtttgtttagagtaggtttaggtacaatgtagt |
21552420 |
T |
|
| Q |
134 |
tgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaa |
213 |
Q |
| |
|
|| || ||||||||| ||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21552419 |
tgt-ttagatgttgaaataacactaactgtgctagtaatttggaatgcactcaaggtgtttgatgaaatgcctaagtgaa |
21552341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1550892 - 1551001
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttagg-tttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| || | ||| ||||| ||| |
|
|
| T |
1550892 |
agttttcataattttagcaaaactttagtgtttatgttaggtttttgaaattgcaaattatgatagaatttgatgttataaagtatagttcttgctcgca |
1550991 |
T |
|
| Q |
100 |
ttgttgttta |
109 |
Q |
| |
|
|||||||||| |
|
|
| T |
1550992 |
ttgttgttta |
1551001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23878000 - 23878060
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatg |
61 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||||||| |||||| | ||||||| |
|
|
| T |
23878000 |
agtttttataattttagcaaaattttagtgtttaagttaggtttgaaaatttctaattatg |
23878060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 86674 - 86465
Alignment:
| Q |
1 |
agttttcataattttagcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcat |
100 |
Q |
| |
|
|||||||||||||||||||||| | || |||||||||||||||| |||||| | ||||||| ||||| |||||| ||||| | |||| |||| | || |
|
|
| T |
86674 |
agttttcataattttagcaaaattgtaatgtttaggttaggtttgaaaattactaattatgagtgaattagatgttgtaatggattgtttatgctagaat |
86575 |
T |
|
| Q |
101 |
tgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaa |
200 |
Q |
| |
|
||||||||| |||| || ||| |||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
86574 |
tgttgtttagagtaagtgtagacacaatgtagttg-tttagatgttcaaataacactaattgtgctagtaatttagaatgcacttaaggtgttt-atgaa |
86477 |
T |
|
| Q |
201 |
atgcctaagtga |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
86476 |
atgcctaagtga |
86465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 19273397 - 19273246
Alignment:
| Q |
71 |
gatgttataatgtttggtttttgctggcattgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagta |
170 |
Q |
| |
|
|||||| |||||| | |||| |||||| ||||||||||| ||||||||||||||||||||||||| || |||||| || |||||||||||||||| || |
|
|
| T |
19273397 |
gatgttttaatgtattgtttatgctggaattgttgtttagagtaggtttaggtacaatgtagttgt-ttagatgttcaaataacactaattgtgctccta |
19273299 |
T |
|
| Q |
171 |
ttttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaaataatcttgc |
223 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
19273298 |
atttagaatgcacataaggtgtttgatgaaatgcctaagtgagatattcttgc |
19273246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 1259726 - 1259614
Alignment:
| Q |
99 |
attgttgtttaaagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatg |
198 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||| || |||||| || ||||||||||| |||| || ||| ||||||| |||||||||||||| |
|
|
| T |
1259726 |
attgttgtttagagtaagtgtaggtacaatgtagttgt-ttagatgttcaaataacactaattatgctcctaatttagaatgcacataaggtgtttgatg |
1259628 |
T |
|
| Q |
199 |
aaatgcctaagtga |
212 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1259627 |
aaatgcgtaagtga |
1259614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 5614270 - 5614341
Alignment:
| Q |
141 |
gatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtga |
212 |
Q |
| |
|
|||||| || |||||||| ||||||| || ||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5614270 |
gatgttcaaataacactagttgtgctcctaatttataatgcacataaggtgtttgatgaaatgcttaagtga |
5614341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0916 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0916
Description:
Target: scaffold0916; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 555 - 760
Alignment:
| Q |
16 |
agcaaaactttagtgtttaggttaggtttaaaaattgcaaattatgttagaatttgatgttataatgtttggtttttgctggcattgttgtttaaagtag |
115 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||| | | | |||| |||| ||||||||||| |||| |
|
|
| T |
555 |
agcaaaatgttagtgtttaggttaggttagaaaattgaaaattatgatagtatttgatgttgtttaggattgtttatgctaa-attgttgtttagagtaa |
653 |
T |
|
| Q |
116 |
gtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtgctagtattttgaaatgcacttaaggtgtttgatgaaatgcctaagtgaaat |
215 |
Q |
| |
|
|| ||| ||||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
654 |
gtgtagttacaatgtagttgt-ttagatgttcaaataacactaattgtgctagtaatttagaatgcacttaaggtgtttgatgaaatgcctaaatgagaa |
752 |
T |
|
| Q |
216 |
aatcttgc |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
753 |
aatcttgc |
760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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