View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_34 (Length: 237)
Name: NF17882_low_34
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5332702 - 5332478
Alignment:
| Q |
1 |
atgaaaatgtgtcagtgtcgtg-ccggtgtttgagaaagtattgtgtttcatagttaattgagaagcttaattaccttagtggtccagcaatgtccttga |
99 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332702 |
atgaaaatgtgtcagtgtcgtatccggtgtttgagaaagtattgtgtttcatagttaattgagaagcttaattaccttagtggtccagcaatgtccttga |
5332603 |
T |
|
| Q |
100 |
ccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatccaccattgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332602 |
ccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatccaccattgt |
5332503 |
T |
|
| Q |
200 |
taatcaagaagattatggtcttctg |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
5332502 |
taatcaagaagattatggtcttctg |
5332478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20436555 - 20436331
Alignment:
| Q |
1 |
atgaaaatgtgtcagtgtcgtg-ccggtgtttgagaaagtattgtgtttcatagttaattgagaagcttaattaccttagtggtccagcaatgtccttga |
99 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20436555 |
atgaaaatgtgtctgtgtcgtgtccggtgtttgagaaagtattgtgtttcatagttaattgagaagcttaattaccttggtggtccagcaatgtccttga |
20436456 |
T |
|
| Q |
100 |
ccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatccaccattgt |
199 |
Q |
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| T |
20436455 |
ccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatccaccattgt |
20436356 |
T |
|
| Q |
200 |
taatcaagaagattatggtcttctg |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
20436355 |
taatcaagaagattatggtcttctg |
20436331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 25606175 - 25606044
Alignment:
| Q |
93 |
tccttgaccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatcca |
192 |
Q |
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||||| ||||||||| || ||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
25606175 |
tccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttcttgataacattgtatggtccatcatgaatttcaacctcaattgtgtatcct |
25606076 |
T |
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| Q |
193 |
ccattgttaatcaagaagattatggtcttctg |
224 |
Q |
| |
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|||||||| |||| |||||| ||||| ||||| |
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| T |
25606075 |
ccattgtttatcaggaagatgatggttttctg |
25606044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 224
Target Start/End: Complemental strand, 25625816 - 25625685
Alignment:
| Q |
93 |
tccttgaccattgtggatagcatcaactaagccagtgtaattccagttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatcca |
192 |
Q |
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||||| ||||||||| || ||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
25625816 |
tccttcaccattgtgaattgcatcaatcaatccagtgtaattccagttcttgataacattgtatggtccatcatgaatttcaacctcaattgtgtatcct |
25625717 |
T |
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| Q |
193 |
ccattgttaatcaagaagattatggtcttctg |
224 |
Q |
| |
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|||||||| |||| |||||| ||||| ||||| |
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| T |
25625716 |
ccattgtttatcaggaagatgatggttttctg |
25625685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 4627360 - 4627278
Alignment:
| Q |
139 |
ttcttgatcacattgtatggtccatcatggatttcaacttcaatagtgtatccaccattgttaatcaagaagattatggtctt |
221 |
Q |
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|||||||||||||||||||| |||||||| || ||||||||||| || || || ||||||||||| | |||||| ||| |||| |
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| T |
4627360 |
ttcttgatcacattgtatggaccatcatgaatctcaacttcaattgtataacctccattgttaatgaggaagatgatgctctt |
4627278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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