View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17882_low_36 (Length: 235)

Name: NF17882_low_36
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17882_low_36
NF17882_low_36
[»] chr5 (5 HSPs)
chr5 (134-221)||(7249959-7250046)
chr5 (29-97)||(7250048-7250116)
chr5 (29-115)||(26747694-26747780)
chr5 (33-117)||(1973314-1973398)
chr5 (31-105)||(23062189-23062263)
[»] chr2 (3 HSPs)
chr2 (31-115)||(30497806-30497890)
chr2 (32-126)||(2121286-2121380)
chr2 (33-114)||(17112305-17112386)
[»] chr8 (3 HSPs)
chr8 (5-115)||(16583190-16583303)
chr8 (30-119)||(26701825-26701914)
chr8 (31-118)||(21511165-21511252)
[»] chr4 (15 HSPs)
chr4 (29-116)||(46518308-46518395)
chr4 (29-115)||(12028349-12028435)
chr4 (29-114)||(17915134-17915219)
chr4 (4-116)||(31302283-31302398)
chr4 (29-116)||(32715268-32715355)
chr4 (31-114)||(46356087-46356170)
chr4 (32-93)||(20854991-20855052)
chr4 (29-81)||(4417440-4417492)
chr4 (32-115)||(20855755-20855838)
chr4 (31-81)||(19438360-19438410)
chr4 (33-115)||(39388410-39388492)
chr4 (33-115)||(51025989-51026071)
chr4 (31-81)||(53896932-53896982)
chr4 (30-115)||(46355379-46355464)
chr4 (32-72)||(14968449-14968489)
[»] chr1 (8 HSPs)
chr1 (31-115)||(15292777-15292861)
chr1 (31-115)||(42058639-42058723)
chr1 (29-115)||(28861925-28862011)
chr1 (29-119)||(7402839-7402928)
chr1 (31-84)||(13706117-13706170)
chr1 (9-113)||(46201162-46201269)
chr1 (33-81)||(10221013-10221061)
chr1 (31-75)||(36858521-36858565)
[»] chr3 (4 HSPs)
chr3 (31-116)||(40469214-40469299)
chr3 (29-114)||(44809788-44809873)
chr3 (43-115)||(33177819-33177891)
chr3 (33-120)||(32428766-32428853)
[»] chr7 (3 HSPs)
chr7 (35-116)||(10552695-10552776)
chr7 (55-115)||(47868482-47868542)
chr7 (29-84)||(1295975-1296030)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 7250046 - 7249959
Alignment:
Q  134 tcaaaaatttaggaggcccaacttggtacataaagctgtttgcatcccctaatggatgactttggtcacgaaacaacgttgaaaccca 221  Q
    ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7250046 tcaaaaatttaggaggcccaattcggtacgtaaagctgtttgcatcccctaatggatgactttggtcacgaaacaacgttcaaaccca 7249959  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 7250116 - 7250048
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccat 97  Q
    ||||||| ||||||||||| ||||||   ||||||||||||||||||||||||||| | ||||||||||    
T  7250116 ttccaacagtagttaactaccgctggagactttttagtaaattatttatgtcaatagcgagtattccat 7250048  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 26747780 - 26747694
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||||||| |||||||| ||||||  |||||||||||||||| || ||||||||  |||| | | |||| |||||||||||||||    
T  26747780 ttccaacggttgttaactaccgctggaggctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattttc 26747694  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 1973314 - 1973398
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaa 117  Q
    |||||| ||||||| |||| || |||||||| |||||||| || ||||||||  |||||||  |||| |||||||||||||||||    
T  1973314 aacggttgttaactgtcgccggaagctttttggtaaattacttgtgtcaatatgaagtattatatgtcaaaaaagcaattttcaa 1973398  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 23062263 - 23062189
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaa 105  Q
    ||||||||||||||||| |||| |   |||||| ||||||||||| ||||||||  ||||||||||||| |||||    
T  23062263 ccaacggtagttaactaccgcttgagactttttggtaaattatttgtgtcaataggaagtattccatgtcaaaaa 23062189  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 30497806 - 30497890
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||    
T  30497806 ccaacggtagttaactaccgctgtgagctttttagtaaattatttatgtcaatagaaagtattacatgtcaaaaaagcaattttc 30497890  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 2121286 - 2121380
Alignment:
Q  32 caacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaaaatatatat 126  Q
    |||||||||||||||| || |||   ||||||||||||||| || ||||||||  ||||||||||||| |||||| |||||||| |||| |||||    
T  2121286 caacggtagttaactaccgttggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaaacaattttctaaatttatat 2121380  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 17112386 - 17112305
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaatttt 114  Q
    |||||| |||||||  ||||||| ||||||| |||||||| || ||||||||  |||||||  |||| ||||||||||||||    
T  17112386 aacggttgttaactgccgctgggggctttttggtaaattacttgtgtcaataggaagtattttatgtcaaaaaagcaatttt 17112305  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 16583303 - 16583190
Alignment:
Q  5 ccaacggtagttaactatcgacggtt---ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgtta 101  Q
    ||||||| |||||||| ||| |||||   ||||||||||||||||| ||||||| |||||||||||||||| || ||||||||  ||||||||||||| |    
T  16583303 ccaacggcagttaactgtcggcggttttcccaacggtagttaactaccgctgggggctttttagtaaattacttgtgtcaataggaagtattccatgtca 16583204  T
Q  102 aaaaagcaattttc 115  Q
    ||||||||||||||    
T  16583203 aaaaagcaattttc 16583190  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 26701914 - 26701825
Alignment:
Q  30 tccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaaaa 119  Q
    ||||||| | |||||||| | || ||||||||||||||||||| || ||||||||  |||| | | |||| |||||||||||||||||||    
T  26701914 tccaacgattgttaactaccacttggagctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattttcaaaa 26701825  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 118
Target Start/End: Original strand, 21511165 - 21511252
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaaa 118  Q
    |||||||| |||||||   ||| || |||||||||||||||| || | ||||||  ||||||||||||  ||||||||||||||||||    
T  21511165 ccaacggtggttaactgctgctaggggctttttagtaaattacttgtatcaataggaagtattccatgacaaaaaagcaattttcaaa 21511252  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 46518308 - 46518395
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttca 116  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||    
T  46518308 ttccaacgggagttaactaccgcttggagctttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaattttca 46518395  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 12028349 - 12028435
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||||||||| |||||| |||||||  |||||||||||||||||| ||||||||  ||||||||||||| |||||||||||||||    
T  12028349 ttccaacggtaggtaactaccgctggggactttttagtaaattatttgtgtcaataggaagtattccatgtcaaaaaagcaattttc 12028435  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 17915219 - 17915134
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaatttt 114  Q
    ||||||||||||||||||| ||||||| |||||||| ||||||| || ||||||||| |||||||||||||  |||||||||||||    
T  17915219 ttccaacggtagttaactaccgctgggggctttttaataaattacttgtgtcaataagaagtattccatgtccaaaaagcaatttt 17915134  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 31302398 - 31302283
Alignment:
Q  4 tccaacggtagttaactatcgacggtt---ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgtt 100  Q
    |||| ||| ||||||||| ||||||||   ||||||||||||||||||||||||  |||||||  ||||||| || |||||| || ||||||||||| |     
T  31302398 tccagcggcagttaactaccgacggtttttccaacggtagttaactatcgctggaggctttttgataaattacttgtgtcaacaagaagtattccatatc 31302299  T
Q  101 aaaaaagcaattttca 116  Q
    ||||||||||||||||    
T  31302298 aaaaaagcaattttca 31302283  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 32715355 - 32715268
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttca 116  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||  |||| | | |||| ||||||||||||||||    
T  32715355 ttccaacggtagttaactaccgctggaggctttttagtaaattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattttca 32715268  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 46356087 - 46356170
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaatttt 114  Q
    |||||||||||||||||  | |||  || ||||||||||||| |||||||||||| |||||||  |||| ||||||||||||||    
T  46356087 ccaacggtagttaactactgttggatgccttttagtaaattacttatgtcaataagaagtattatatgtcaaaaaagcaatttt 46356170  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 20855052 - 20854991
Alignment:
Q  32 caacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtatt 93  Q
    |||||||| ||||||| |||||||||||||||||||||||| || ||||||||  |||||||    
T  20855052 caacggtaattaactaccgctgggagctttttagtaaattacttgtgtcaatagaaagtatt 20854991  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 4417440 - 4417492
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtca 81  Q
    ||||||||||||||||||| | ||  ||||||||||||||||||||| |||||    
T  4417440 ttccaacggtagttaactacctctaagagctttttagtaaattatttgtgtca 4417492  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 20855755 - 20855838
Alignment:
Q  32 caacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||||||||||||| |||||   |||||||| ||||||| || || |||||  |||||||| |||| |||||| ||||||||    
T  20855755 caacggtagttaactaccgctgaaggctttttaataaattacttgtgccaataggaagtattctatgtaaaaaaaacaattttc 20855838  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 19438410 - 19438360
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtca 81  Q
    ||||||||||||||||| ||||||| ||| |||||||||||| || |||||    
T  19438410 ccaacggtagttaactaccgctgggggctatttagtaaattacttgtgtca 19438360  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 39388492 - 39388410
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||| ||||||||||||||| ||| ||| ||||| ||| || |||||||   || | ||| ||||||||||||||||||||    
T  39388492 aacggtggttaactatcgctggaagcatttaagtaatttacttgtgtcaattggaacttttcaatgttaaaaaagcaattttc 39388410  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 51026071 - 51025989
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||| |||||||  ||||||  |||||||  ||||||| || ||||||||  |||||||| |||| |||||||||||||||    
T  51026071 aacggttgttaactgccgctggaggctttttgataaattacttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 51025989  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 53896982 - 53896932
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtca 81  Q
    ||||||||||||||||| ||||||| ||| |||||||||||| || |||||    
T  53896982 ccaacggtagttaactaccgctgggggctatttagtaaattacttctgtca 53896932  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 46355464 - 46355379
Alignment:
Q  30 tccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||| ||||||||||| ||| | | |||||||||||||||| || ||| ||||  |||||||  |||| |||||| ||||||||    
T  46355464 tccaacagtagttaactaccgccgtgggctttttagtaaattacttgtgttaataggaagtattatatgtcaaaaaaacaattttc 46355379  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 14968489 - 14968449
Alignment:
Q  32 caacggtagttaactatcgctgggagctttttagtaaatta 72  Q
    ||||| |||||||||| ||||||||| ||||||||||||||    
T  14968489 caacgatagttaactaccgctgggagttttttagtaaatta 14968449  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 15292777 - 15292861
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    ||||||||||||||||||||||||  ||||||| |||||||| || ||||||||| ||||||||||||| ||||||| |||||||    
T  15292777 ccaacggtagttaactatcgctggaggctttttggtaaattacttgtgtcaataagaagtattccatgtcaaaaaagaaattttc 15292861  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 42058639 - 42058723
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    ||||||||||||||||| | |||| |||||||| |||||||| ||||||||||| |||||||||||| | |||||||||||||||    
T  42058639 ccaacggtagttaactaccactggaagctttttggtaaattacttatgtcaatagcaagtattccatatcaaaaaagcaattttc 42058723  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 28862011 - 28861925
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    ||||||||| ||||||||  |||| ||||||||||||||||||| || ||||||||  ||||||| ||||| |||||||||||||||    
T  28862011 ttccaacggaagttaactgccgctaggagctttttagtaaattacttgtgtcaataggaagtatttcatgtcaaaaaagcaattttc 28861925  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 7402928 - 7402839
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaaaa 119  Q
    |||||||||| |||||||| | || || |||||||||||||||| || ||||||||  |||| | | |||| |||||||||||||||||||    
T  7402928 ttccaacggttgttaactaccactaggggctttttagtaaattactt-tgtcaataggaagtttcctatgtcaaaaaagcaattttcaaaa 7402839  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 13706170 - 13706117
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaata 84  Q
    ||||||||||||||||| || |||| |||||||||||||||| || ||||||||    
T  13706170 ccaacggtagttaactaccgttgggggctttttagtaaattacttgtgtcaata 13706117  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 46201162 - 46201269
Alignment:
Q  9 cggtagttaactatcgacggtt---ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaa 105  Q
    |||||||||||| |||||| ||   ||||| ||||||||| || | ||||  |||| |||||||||| || ||||||||  || |||||||||| |||||    
T  46201162 cggtagttaactgtcgacgattttaccaactgtagttaacgattgttggggactttatagtaaattacttgtgtcaataggaaatattccatgtcaaaaa 46201261  T
Q  106 agcaattt 113  Q
    ||||||||    
T  46201262 agcaattt 46201269  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 10221061 - 10221013
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtca 81  Q
    ||||||||||||||| ||||||| ||| |||||||||||| || |||||    
T  10221061 aacggtagttaactaccgctgggggctatttagtaaattacttgtgtca 10221013  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 36858565 - 36858521
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattattt 75  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||||    
T  36858565 ccaacggtagttaactaccgctgagagctatttaataaattattt 36858521  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 40469214 - 40469299
Alignment:
Q  31 ccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttca 116  Q
    |||||||||||||||||  |||||  ||||||||||||||||||| ||||||||  |||||||| |||| ||||||||||||||||    
T  40469214 ccaacggtagttaactactgctggatgctttttagtaaattatttgtgtcaataggaagtattcaatgtcaaaaaagcaattttca 40469299  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 44809873 - 44809788
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaatttt 114  Q
    ||||||||||||||||||| |||||    ||||||| |||||||| | ||||||||  ||||||||||||| |||||| |||||||    
T  44809873 ttccaacggtagttaactaccgctgaagactttttaataaattatctgtgtcaataggaagtattccatgtcaaaaaaacaatttt 44809788  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 33177819 - 33177891
Alignment:
Q  43 aactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    ||||| || |||| |||||||||| ||||| |||||| ||||| || |||| ||||| |||||||||||||||    
T  33177819 aactaccgttgggggctttttagttaattacttatgttaataaaaaatatttcatgtcaaaaaagcaattttc 33177891  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 32428766 - 32428853
Alignment:
Q  33 aacggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttcaaaat 120  Q
    |||||| ||||||| |||||||| ||  ||  |||||||| |||||||||||  |||| ||| |||| | ||||||||||||||||||    
T  32428766 aacggttgttaactgtcgctgggggcaattatgtaaattacttatgtcaataggaagttttctatgtcagaaaagcaattttcaaaat 32428853  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 10552776 - 10552695
Alignment:
Q  35 cggtagttaactatcgctgggagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttca 116  Q
    |||| |||||||| ||||||   ||||||||||||||| || ||||||||  ||||||||||||| ||||||||||| ||||    
T  10552776 cggttgttaactaccgctggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaatcttca 10552695  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 47868482 - 47868542
Alignment:
Q  55 gagctttttagtaaattatttatgtcaataacaagtattccatgttaaaaaagcaattttc 115  Q
    |||||||||||||||||| |||||||||||  || | ||| |||| |||||||||||||||    
T  47868482 gagctttttagtaaattacttatgtcaataggaacttttctatgtcaaaaaagcaattttc 47868542  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 1296030 - 1295975
Alignment:
Q  29 ttccaacggtagttaactatcgctgggagctttttagtaaattatttatgtcaata 84  Q
    ||||||||||||||||||| ||||| | | |||||||||||||| || ||||||||    
T  1296030 ttccaacggtagttaactaccgctgagggttttttagtaaattacttgtgtcaata 1295975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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