View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_4 (Length: 515)
Name: NF17882_low_4
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 37 - 427
Target Start/End: Complemental strand, 7899581 - 7899191
Alignment:
| Q |
37 |
gtgttgataaaggttacaattacacatattcctgaagttatgtaccttttgaatcctaaattcggtttttaannnnnnnnnctttctttctctcaataca |
136 |
Q |
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| T |
7899581 |
gtgtagataaaggttacaattacacatattcctgaagttatgtaccttttgaatcctaaatttggtttttaatttttttttctttctttctctcaataca |
7899482 |
T |
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| Q |
137 |
gctcacgcgtggttgacttgatccgacacatggcttcagttggttaatgtgcaaggagtttttggcatacatctagtgcaatgacacttctatcttacaa |
236 |
Q |
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| T |
7899481 |
gctcacgcgtggttgacttgatccgacacatggcttcagttggttaatgtgcaaggagtttttggcatacatctagtgcaatgacacttctatcttacaa |
7899382 |
T |
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| Q |
237 |
atcaagcattcagtaaagtagatttttggaataattttgcttctgttaaatgacgagaatattgttccacacaacttaattcatgtcttcaagcttctat |
336 |
Q |
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| T |
7899381 |
atcaagcattcagtaaagtagatttttggaataattttgcttctgttaaatgacgagaatattgttccacacaacttaattcatgtgttcaagcttctat |
7899282 |
T |
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| Q |
337 |
attttggattagttttcatcttatatacagttctaaagaaatattttgaatatgtttacattctggaagaatattggaagaagtttgtcaa |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7899281 |
attttggattagttttcatcttatatacagttctaaagaatttttttgaatatgtttacattctggaagaatattggaagaattttgtcaa |
7899191 |
T |
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