View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_5 (Length: 494)
Name: NF17882_low_5
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 33399430 - 33398963
Alignment:
| Q |
11 |
cagagataaattggtctcctgtaccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatggaccgctccccgacggtccctgctgca |
110 |
Q |
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| T |
33399430 |
cagagataaattggtctcctgtaccctcacctacaccggcccctcaagcagcaccaccttcaaatgcaccatggaccgctccccgccggtccctgctgca |
33399331 |
T |
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| Q |
111 |
aaagaagctattcaaaacgattcacaggaatctgataactgtttgagattggattagttcatgtgtcatgtttcaaagtggggctattttttctagtgac |
210 |
Q |
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| T |
33399330 |
aaagtagctattcaaaacgattcacaggaatctgataactgtttgagattggattagttcatgtgtcatgtttcaaagtggggctattttttctagttac |
33399231 |
T |
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| Q |
211 |
taaaatcattaattatttattttctttatgttggtgaatttatttacacacataaataaaaagaatcacacgtttcctagtgatgatttcaaatctgatc |
310 |
Q |
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| T |
33399230 |
taaaatcattaattatttattttctttatgttggtgaatttatttacacacataaataaaaagaatcacacgtttcctagtgatgatttcaaatctgatc |
33399131 |
T |
|
| Q |
311 |
ttatagctcttcctgaatttcttacaatggggtttgcatttgttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgta |
410 |
Q |
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| T |
33399130 |
ttatagctcttcctgaatttcttacaatgggg-ttgcatttgttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgta |
33399032 |
T |
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| Q |
411 |
ctggtgttactatgatttatggtaaataaagttatcttaaaactaacattgaacaaagtagaactttct |
479 |
Q |
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| T |
33399031 |
ctggtgttactatgatttatggtaaataaagttatcttaaaactaacattgaacaaagtagaactttct |
33398963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 33395546 - 33395394
Alignment:
| Q |
11 |
cagagataaattggtctcctgtaccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatggaccgctccccgacggtccctgctgca |
110 |
Q |
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||||||||| ||||||||| || ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
33395546 |
cagagataacttggtctccggtgccctcacctacaccgtcccctgaagtagcaccgccttcaaatgcaccatggaccgctgcccgccggtccctactgcc |
33395447 |
T |
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| Q |
111 |
aaagaagctattcaaaacgattcacaggaatctgataactgtttgagattgga |
163 |
Q |
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| T |
33395446 |
aaagaagctattcaaaatgattcacagaaatttgatagctgtttgagattgga |
33395394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 33395617 - 33395566
Alignment:
| Q |
33 |
accctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg |
84 |
Q |
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| T |
33395617 |
accctcacctacaccggcccatgaagcagcaccgtcttcaaatgcaccatgg |
33395566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 33399600 - 33399549
Alignment:
| Q |
33 |
accctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg |
84 |
Q |
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| T |
33399600 |
accctcacctgtgccggcccctgaagcagcaccgccttcaaatgcaccatgg |
33399549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 33399500 - 33399450
Alignment:
| Q |
34 |
ccctcacctacaccggcccctcaagcagcaccgccttcaaatgcaccatgg |
84 |
Q |
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| T |
33399500 |
ccctcacctacaccagcccctgaagccgcacctccttcaaatgcaccatgg |
33399450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 478
Target Start/End: Complemental strand, 33395105 - 33394980
Alignment:
| Q |
352 |
gttttcctgtccaataataaaatcatgttgaattatttgatatcaaagaaaattgtgtactgg-tgttactatgatttatggtaaataaagttatcttaa |
450 |
Q |
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| T |
33395105 |
gttttcccgtctaataataaaatcatgtggaattattt--tatcgaagaaagttgtgcaatggatactactatgatttaatgtaaacaaaatcatcttaa |
33395008 |
T |
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| Q |
451 |
aactaacattgaacaaagtagaactttc |
478 |
Q |
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| T |
33395007 |
aattaatattggacaaaacagaactttc |
33394980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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