View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_7 (Length: 462)
Name: NF17882_low_7
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_7 |
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| [»] scaffold0151 (1 HSPs) |
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Alignment Details
Target: scaffold0151 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0151
Description:
Target: scaffold0151; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 20025 - 19627
Alignment:
| Q |
13 |
gggaagaatgagtcattatagttgatggagcttctgatgatcgctggtgccttgatccgttaggtttttaatttcattcaatgcttccttttgccccaag |
112 |
Q |
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| T |
20025 |
gggaagaaggaggcattataggagatgtagcttccgattatctctggtgcattgatccgttaggtttgtaatttcattcaatgcttccttttgccccaat |
19926 |
T |
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| Q |
113 |
attttaagaaataattctagtgttaagcatacaacgagattcttgcgtgcaaatgtatttggaggttctttgaaagagagacatcaatttgaattcgttc |
212 |
Q |
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| T |
19925 |
attttaagaaataattctagttttaagcatacaactagatgctggcgttcaaatgtatttgaaggttctttgaaagagagacatcaatttgaattccttc |
19826 |
T |
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| Q |
213 |
attatgttcttcctttcattcgtagcgtgtcctattcta-----------------tgacacgacttacacgtcgacactggtaataatttgagaaaatt |
295 |
Q |
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| T |
19825 |
attatgttcttcctttcattcgtagcgtgtcctattctatgcactgacacaagtattgacacgacttacacgtcgacaccggtaataatttgagaaaatt |
19726 |
T |
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| Q |
296 |
gaatgtaaccacatgtgtcagttatatgtattttccaagttcctttactctattcttcaaatgaaattcctttttgcttgtgttctttgtatgggaggc |
394 |
Q |
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| T |
19725 |
gaatgtaaccacatgtgtcagttatatgtattttccaagttcctttactctattcttcaaatgaaattcctttttgcttgtgttctttgtatgtgaggc |
19627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 33887023 - 33887060
Alignment:
| Q |
263 |
acacgtcgacactggtaataatttgagaaaattgaatg |
300 |
Q |
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| T |
33887023 |
acacgtcgacattgataataatttgagaaaattgaatg |
33887060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 32532124 - 32532092
Alignment:
| Q |
278 |
taataatttgagaaaattgaatgtaaccacatg |
310 |
Q |
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| T |
32532124 |
taataatttgagaaaattgaatctaaccacatg |
32532092 |
T |
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