View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_8 (Length: 452)
Name: NF17882_low_8
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 5 - 413
Target Start/End: Complemental strand, 32285787 - 32285368
Alignment:
| Q |
5 |
tgggtagattatactgtttaacagtcttcgttgggtatccctgaggatgggatcatgacatcacaacttcttgagaggctatatttggatatacggacta |
104 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32285787 |
tgggtatattatattgtttaacagtcttcgttgggtatccctgaggatgggatcatgacatcacaccttcttgagaggctatatttggatatacggacta |
32285688 |
T |
|
| Q |
105 |
cggatatagatagtgtaaatgaaaccaaaaaatctgccactgttttaccgaaggtatgtctgttatataagttgtactttttgctgagtatgacatgtta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32285687 |
cggatatagatagtgtaaatgaaaccaaaaaatctgcctctgttttaccgaaggtatgtctgttatataagttgtactttttgctgagtatgacatgtta |
32285588 |
T |
|
| Q |
205 |
gtgtccaacacctacacaacaccagcacatgtgatcacattgaatcacttatattttcttaaattgttattagtatctacacattggtattgtgtcggtt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32285587 |
gtgtccaacacctacacaacaccagcacatgtgatcacattgaatcacttatattttcttaaattgttattagtatctacacattggtattgtgtcgggt |
32285488 |
T |
|
| Q |
305 |
gtccatgtctctgtcagtgtttcatagatgatatgccatgttctaagggatt-----------ggtcttgatggaaatctgaataaggaacacaaaatat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
32285487 |
gtccatgtctctgtcagtgtttcatagatgatatgccatgttctaagggattggtcaatgattggtcctgatggaaatctgaataaggaacacaaaatat |
32285388 |
T |
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| Q |
394 |
atgcaagacctcaacatatg |
413 |
Q |
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|||||||||||||||||||| |
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| T |
32285387 |
atgcaagacctcaacatatg |
32285368 |
T |
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