View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17882_low_9 (Length: 437)
Name: NF17882_low_9
Description: NF17882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17882_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 99 - 422
Target Start/End: Original strand, 9658970 - 9659296
Alignment:
| Q |
99 |
agtctcatttggcttagttttatcacatttccttattagtcacttaaatatattatatgcatttgttaaatgatt--gttttgagttgtgacttatgtat |
196 |
Q |
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| T |
9658970 |
agtctcatttggcttagttttatcacatttccttattagtcacttaaatatattatatgcatttgttaaatgattatgttttgagttgtgacttatgtat |
9659069 |
T |
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| Q |
197 |
aatagttaagtatttttaatttgtagactttgatggtttcaacttccaccttgttaatttggtcgttaggcattaagactattgtttttg-gcttttgtt |
295 |
Q |
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| T |
9659070 |
aatagttaagcatttttaatttgtagactttgatggtttcaacttccaccttgttaatttggtcgttaggcattaagactattgtttttgtgtttttttt |
9659169 |
T |
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| Q |
296 |
gagtggctaagcaccacatctaacatcagctctccatagtcaaactttgatggtttccacctttacttgctagttaagctttgtcctaaaacagaaattc |
395 |
Q |
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| T |
9659170 |
gagtggcaaagcaccacatctaacatcagctctccatagtcaaactttgatggtttccacctttacttgctagttaagctttgtcctaaaacagaaattc |
9659269 |
T |
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| Q |
396 |
gataagtgcttaaacaagggtcaaact |
422 |
Q |
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| T |
9659270 |
gataagtgcttaaacaagggttaaact |
9659296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 9658882 - 9658915
Alignment:
| Q |
11 |
tcatcaataatgaccttttatcccagatactaac |
44 |
Q |
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| T |
9658882 |
tcatcaataatgaccttttatcccagatactaac |
9658915 |
T |
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