View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_high_17 (Length: 376)

Name: NF17883_high_17
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_high_17
NF17883_high_17
[»] chr2 (1 HSPs)
chr2 (44-360)||(43109912-43110228)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 44 - 360
Target Start/End: Original strand, 43109912 - 43110228
Alignment:
Q  44 tgtgtttgatttgtaagaaaacgaagtattagacgagacaaatatatttgtccaatgtttgatttaaaaaagcaattaacaaaggacaacacataataaa 143  Q
    ||||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  43109912 tgtgtttgatttgtaagaaaatgaagtattggacgggacaaaaatatttgtccaatgtttgatttgaaaaagcaattaataaaggacaacacagaataaa 43110011  T
Q  144 acgtgatgcactagacaactttcccnnnnnnngttaaaattgaattcaaaataaaattgaaaagtatttgaacannnnnnncacaataaagttatatcgt 243  Q
    | |  |||||||||||||||| |||       |||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  43110012 aagctatgcactagacaacttcccctttttttgttaaaattgaaatcaaaataaaattgaaaagtatttgaacatttttttcacaataaagttatatcgt 43110111  T
Q  244 ttcattcatcaaatgggaaaaatacaattaatttcaaaattatctttattgggaaattatgtattcaattaatttctctcctcacattagattagataga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43110112 ttcattcatcaaatgggaaaaatacaattaatttcaaaattatctttatagggaaattatgtattcaattaatttctctcctcacattagattagataga 43110211  T
Q  344 tatacacaccttgcaca 360  Q
    |||||||||||||||||    
T  43110212 tatacacaccttgcaca 43110228  T

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