View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_high_25 (Length: 293)

Name: NF17883_high_25
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_high_25
NF17883_high_25
[»] chr5 (19 HSPs)
chr5 (144-270)||(39458492-39458618)
chr5 (1-111)||(39458609-39458719)
chr5 (54-270)||(39480123-39480344)
chr5 (1-55)||(6865796-6865850)
chr5 (1-53)||(13734369-13734421)
chr5 (1-53)||(14206399-14206451)
chr5 (1-55)||(8725431-8725485)
chr5 (1-53)||(12203157-12203209)
chr5 (1-49)||(33567232-33567280)
chr5 (1-57)||(5386079-5386132)
chr5 (1-51)||(33910097-33910147)
chr5 (5-55)||(43153073-43153123)
chr5 (4-49)||(21210833-21210878)
chr5 (1-53)||(372729-372781)
chr5 (1-53)||(4434481-4434533)
chr5 (1-53)||(14923082-14923133)
chr5 (1-53)||(32732127-32732179)
chr5 (226-270)||(39475433-39475477)
chr5 (15-55)||(43057432-43057472)
[»] chr7 (24 HSPs)
chr7 (1-52)||(8459614-8459665)
chr7 (1-60)||(24380730-24380789)
chr7 (1-53)||(2469702-2469754)
chr7 (1-53)||(22330640-22330692)
chr7 (1-53)||(37351999-37352051)
chr7 (5-53)||(39875822-39875870)
chr7 (1-53)||(43213318-43213370)
chr7 (1-54)||(25887592-25887645)
chr7 (3-52)||(43444635-43444684)
chr7 (1-53)||(6822542-6822594)
chr7 (1-53)||(31785480-31785532)
chr7 (25-61)||(35592787-35592823)
chr7 (1-53)||(40108134-40108186)
chr7 (1-52)||(27866546-27866597)
chr7 (1-52)||(33465048-33465099)
chr7 (1-54)||(21839142-21839195)
chr7 (1-54)||(27570353-27570406)
chr7 (3-52)||(37848631-37848680)
chr7 (11-52)||(44196238-44196279)
chr7 (5-58)||(45420073-45420126)
chr7 (15-52)||(48314395-48314432)
chr7 (1-54)||(49142526-49142579)
chr7 (1-53)||(2323303-2323355)
chr7 (1-53)||(41985109-41985161)
[»] chr3 (21 HSPs)
chr3 (1-55)||(48490522-48490576)
chr3 (1-53)||(29846900-29846952)
chr3 (1-52)||(29057659-29057710)
chr3 (1-55)||(47683798-47683852)
chr3 (1-53)||(35368621-35368673)
chr3 (1-53)||(46952948-46953000)
chr3 (1-53)||(50745559-50745611)
chr3 (1-52)||(9719461-9719512)
chr3 (26-60)||(28300693-28300727)
chr3 (1-51)||(35554124-35554174)
chr3 (1-55)||(50876371-50876425)
chr3 (1-61)||(3484761-3484821)
chr3 (1-53)||(23906996-23907048)
chr3 (1-53)||(28700471-28700523)
chr3 (1-53)||(36318291-36318343)
chr3 (1-61)||(38957521-38957580)
chr3 (5-56)||(42718127-42718179)
chr3 (1-53)||(43169762-43169814)
chr3 (1-53)||(48117346-48117398)
chr3 (1-53)||(49361844-49361896)
chr3 (1-53)||(55361242-55361294)
[»] chr4 (31 HSPs)
chr4 (1-53)||(42490919-42490971)
chr4 (1-52)||(24310530-24310581)
chr4 (4-54)||(48494924-48494974)
chr4 (1-58)||(30973591-30973648)
chr4 (1-53)||(1868902-1868954)
chr4 (4-52)||(4974111-4974159)
chr4 (1-53)||(46173549-46173601)
chr4 (1-53)||(46686244-46686295)
chr4 (1-52)||(39241310-39241361)
chr4 (1-51)||(5386385-5386435)
chr4 (3-53)||(31413797-31413847)
chr4 (8-54)||(41119497-41119543)
chr4 (1-54)||(2109441-2109494)
chr4 (3-52)||(7795025-7795074)
chr4 (1-54)||(9827992-9828045)
chr4 (1-54)||(39605977-39606029)
chr4 (1-54)||(50980600-50980653)
chr4 (1-53)||(4511824-4511876)
chr4 (1-53)||(5234480-5234532)
chr4 (5-53)||(7146144-7146192)
chr4 (1-61)||(11997676-11997736)
chr4 (5-53)||(27384186-27384234)
chr4 (1-53)||(28480547-28480599)
chr4 (1-53)||(28481421-28481473)
chr4 (1-53)||(28482296-28482348)
chr4 (1-61)||(28657449-28657509)
chr4 (1-53)||(37022271-37022323)
chr4 (26-62)||(38133970-38134006)
chr4 (25-53)||(39844302-39844330)
chr4 (1-49)||(48326555-48326603)
chr4 (1-53)||(54036538-54036590)
[»] chr1 (31 HSPs)
chr1 (5-53)||(14983783-14983831)
chr1 (1-53)||(45272169-45272221)
chr1 (1-55)||(5975545-5975599)
chr1 (3-53)||(38913597-38913647)
chr1 (1-53)||(11121491-11121543)
chr1 (1-53)||(49453490-49453542)
chr1 (5-51)||(51571416-51571462)
chr1 (1-49)||(5477172-5477220)
chr1 (1-53)||(30414874-30414926)
chr1 (1-53)||(40596063-40596115)
chr1 (1-53)||(46903480-46903532)
chr1 (1-57)||(49241513-49241569)
chr1 (1-52)||(16252768-16252819)
chr1 (1-52)||(40139126-40139177)
chr1 (1-52)||(41507203-41507254)
chr1 (4-58)||(47386817-47386871)
chr1 (1-51)||(50460721-50460771)
chr1 (6-55)||(4857919-4857968)
chr1 (3-52)||(29264015-29264064)
chr1 (3-52)||(35030773-35030822)
chr1 (4-53)||(43612092-43612141)
chr1 (1-54)||(43757597-43757650)
chr1 (7-52)||(48872043-48872088)
chr1 (5-53)||(3826828-3826876)
chr1 (1-53)||(4154591-4154643)
chr1 (10-58)||(10385421-10385469)
chr1 (1-53)||(27687528-27687580)
chr1 (1-53)||(31480128-31480180)
chr1 (2-53)||(38303697-38303749)
chr1 (1-53)||(49589983-49590035)
chr1 (1-53)||(50797790-50797842)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-53)||(3280-3332)
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-53)||(31609-31661)
[»] chr8 (33 HSPs)
chr8 (1-53)||(5740794-5740846)
chr8 (1-53)||(7325725-7325777)
chr8 (1-53)||(37392137-37392189)
chr8 (1-52)||(1370294-1370345)
chr8 (1-52)||(32777896-32777947)
chr8 (6-52)||(9047084-9047130)
chr8 (5-54)||(5502369-5502418)
chr8 (1-53)||(324103-324155)
chr8 (1-53)||(13924021-13924073)
chr8 (1-53)||(18538385-18538437)
chr8 (1-52)||(1796496-1796547)
chr8 (1-52)||(6243045-6243096)
chr8 (2-53)||(14233654-14233705)
chr8 (1-52)||(36675336-36675387)
chr8 (1-52)||(41776186-41776237)
chr8 (1-52)||(44103776-44103827)
chr8 (1-52)||(45081398-45081449)
chr8 (3-49)||(157070-157116)
chr8 (15-53)||(3155842-3155880)
chr8 (1-51)||(39211054-39211104)
chr8 (15-53)||(43066628-43066666)
chr8 (1-54)||(7010683-7010736)
chr8 (15-52)||(21526315-21526352)
chr8 (2-51)||(32020475-32020524)
chr8 (15-60)||(40102015-40102060)
chr8 (1-54)||(45405828-45405881)
chr8 (11-51)||(895935-895975)
chr8 (1-53)||(25430656-25430708)
chr8 (25-69)||(26442696-26442740)
chr8 (1-53)||(29107994-29108046)
chr8 (1-52)||(38174242-38174294)
chr8 (1-53)||(38939198-38939250)
chr8 (1-49)||(42768131-42768179)
[»] chr6 (14 HSPs)
chr6 (1-53)||(12427236-12427288)
chr6 (1-53)||(31517189-31517241)
chr6 (1-54)||(2241827-2241880)
chr6 (1-53)||(1196057-1196109)
chr6 (1-53)||(12441537-12441589)
chr6 (2-53)||(2165310-2165361)
chr6 (2-53)||(2176943-2176994)
chr6 (1-52)||(32644623-32644674)
chr6 (3-53)||(32149499-32149549)
chr6 (3-52)||(16121163-16121212)
chr6 (1-53)||(6158789-6158841)
chr6 (5-53)||(16328714-16328762)
chr6 (1-53)||(17442832-17442884)
chr6 (1-53)||(25567499-25567551)
[»] chr2 (23 HSPs)
chr2 (1-53)||(42081047-42081099)
chr2 (1-56)||(10550468-10550523)
chr2 (3-49)||(44422981-44423027)
chr2 (5-53)||(8482245-8482293)
chr2 (1-53)||(28013966-28014018)
chr2 (1-52)||(7121390-7121441)
chr2 (1-56)||(22296138-22296193)
chr2 (1-52)||(24727426-24727477)
chr2 (1-52)||(37737986-37738036)
chr2 (1-52)||(38600825-38600876)
chr2 (5-52)||(45202145-45202192)
chr2 (1-55)||(37966364-37966418)
chr2 (1-55)||(40496358-40496412)
chr2 (1-62)||(27538925-27538986)
chr2 (1-58)||(29795441-29795498)
chr2 (3-56)||(44058727-44058780)
chr2 (15-55)||(4036910-4036950)
chr2 (1-53)||(4138194-4138246)
chr2 (1-53)||(5191703-5191755)
chr2 (5-49)||(11828833-11828877)
chr2 (9-53)||(19695708-19695752)
chr2 (1-53)||(40700206-40700258)
chr2 (15-55)||(43057061-43057101)
[»] scaffold0286 (1 HSPs)
scaffold0286 (2-53)||(17048-17099)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-49)||(71599-71645)
[»] scaffold0504 (1 HSPs)
scaffold0504 (3-51)||(11159-11207)
[»] scaffold0194 (1 HSPs)
scaffold0194 (1-53)||(29781-29833)
[»] scaffold0115 (1 HSPs)
scaffold0115 (15-55)||(15222-15262)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 39458618 - 39458492
Alignment:
Q  144 ctaataattgtctacacactatttctatttctatttctatataacaaaaaggacatcaaagaacaattgagaacacagtcactcacactgagtaagtgca 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458618 ctaataattgtctacacactatttctatttctatttctatataacaaaaaggacatcaaagaacaattgagaacacagtcactcacactgagtaagtgca 39458519  T
Q  244 tatccaggatgaagaaagcagaagtgg 270  Q
    |||||||||||||||||||||||||||    
T  39458518 tatccaggatgaagaaagcagaagtgg 39458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 39458719 - 39458609
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataattgaaaaaacaaagtaatgcaatgtaaaccatgtatact 100  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458719 tgagtatgagagagaaagttgtcaaaaactggttgtacagatatcatttctctaataataattgaaaaaacaaagtaatgcaatgtaaaccatgtatact 39458620  T
Q  101 tctaataattg 111  Q
    |||||||||||    
T  39458619 tctaataattg 39458609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 39480123 - 39480344
Alignment:
Q  54 aataataattgaaaaaacaaagtaatgcaatgtaaaccatgtatacttctaataat--------tgacagggacatacatcaaacaccaataatcatact 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |        | |||||||||||||| |||||||||||||||||||    
T  39480123 aataataattgaaaaaacaaagtaatgcaatgtaaaccatgtatatttctaatagtgtactgtttcacagggacatacattaaacaccaataatcatact 39480222  T
Q  146 aat----aattgtctacacactatttctatttctatttctatataacaaaaagga-catcaaagaacaattgagaacacagtcactcacactgagtaagt 240  Q
    |||    |||| ||||||         ||||| ||||||| | |||||||||| | |||||||||||||| || ||||||||||||||||||||||||||    
T  39480223 aattaataattctctacat--------tatttatatttctgtgtaacaaaaagaaacatcaaagaacaatagaaaacacagtcactcacactgagtaagt 39480314  T
Q  241 gcatatccaggatgaagaaagcagaagtgg 270  Q
    ||||||||||||||||||||||||||||||    
T  39480315 gcatatccaggatgaagaaagcagaagtgg 39480344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6865796 - 6865850
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||||    
T  6865796 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctaa 6865850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13734369 - 13734421
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  13734369 tgagtatgagagagaaagttgtcataaagtggttgtacaaatatcatttctct 13734421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14206451 - 14206399
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  14206451 tgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 14206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8725431 - 8725485
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||   |||||||||||||| |||| ||||||||||    
T  8725431 tgagtatgagagagaaagttgtaataaagtggttgtacaaatataatttctctaa 8725485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12203209 - 12203157
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||| |||||||||||||||||  |||| |||||||||| |||||||||||||    
T  12203209 tgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 12203157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33567232 - 33567280
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||    
T  33567232 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 33567280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5386132 - 5386079
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaata 57  Q
    ||||||||||||||||||||||| ||||   |||||||| |||||||||||| ||||    
T  5386132 tgagtatgagagagaaagttgtttaaaa---gttgtacaaatatcatttctcaaata 5386079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33910097 - 33910147
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||||||  |||| |||||| ||| |||||||||||    
T  33910097 tgagtatgagagagaaagttgtcaaaaaatggttgaacaaatatcatttct 33910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 43153073 - 43153123
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||  |||| | |||||||| |||||||||||||||    
T  43153073 tatgagagagaaagttgtacaaaaattgttgtacaaatatcatttctctaa 43153123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 21210878 - 21210833
Alignment:
Q  4 gtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    |||||||||||||||||||  |||||||||||| || |||||||||    
T  21210878 gtatgagagagaaagttgtcaaaaagtggttgttcaaatatcattt 21210833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 372729 - 372781
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| |||||||||| | |||||||||||    
T  372729 tgagtatgagagagaaagttgtcacaaaatggttgtacaaaaatcatttctct 372781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4434533 - 4434481
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||| ||||  |||| |||||||||| |||||||||||||    
T  4434533 tgagtatgagagaaaaaattgtcaaaaaatggttgtacaaatatcatttctct 4434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14923133 - 14923082
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||| | |||| ||||||| || |||||||||||||    
T  14923133 tgagtatgagagagaaagttg-taaaaaatggttgttcaaatatcatttctct 14923082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32732127 - 32732179
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| || ||||||| |||| ||||||||    
T  32732127 tgagtatgagagagaaagttgtacaaaaatgattgtacaaatataatttctct 32732179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 39475433 - 39475477
Alignment:
Q  226 tcacactgagtaagtgcatatccaggatgaagaaagcagaagtgg 270  Q
    |||||||||  ||||| ||||||| ||||||||||||||||||||    
T  39475433 tcacactgatcaagtgtatatccaagatgaagaaagcagaagtgg 39475477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 43057472 - 43057432
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||  ||||||||||||||| |||||||||||||||    
T  43057472 aaagttgtcaaaaagtggttgtacaaatatcatttctctaa 43057432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8459665 - 8459614
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  8459665 tgagtatgagagagaaagttgttaaaaagtggttgtacaaatatcatttctc 8459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24380730 - 24380789
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataata 60  Q
    ||||||||||| ||||||||||  |||| |||||||||| ||||||||||||||||||||    
T  24380730 tgagtatgagaaagaaagttgtataaaaatggttgtacaaatatcatttctctaataata 24380789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2469754 - 2469702
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  2469754 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 2469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22330640 - 22330692
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  22330640 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 22330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37351999 - 37352051
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  37351999 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 37352051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39875822 - 39875870
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||||    
T  39875822 tatgagagagaaagttgttaaaaagtggttgtataaatatcatttctct 39875870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43213370 - 43213318
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||||||||||    
T  43213370 tgagtatgagagagaaaattgttagaaagtggttgtacaaatatcatttctct 43213318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25887645 - 25887592
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||||||||||||   ||||||| |||||| ||||||||||||||    
T  25887645 tgagtatgagagagaaagttgtcacaaagtggatgtacaaatatcatttctcta 25887592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 43444684 - 43444635
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||   |||||||||||||| ||||||||||||    
T  43444684 agtatgagagagaaagttgtcataaagtggttgtacaaatatcatttctc 43444635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6822542 - 6822594
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| |||||||||  ||| |||||||||| |||||||||||||    
T  6822542 tgagtatgagagaaaaagttgttagaaaatggttgtacaaatatcatttctct 6822594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31785480 - 31785532
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||| |   |||||||||||||| |||||||||||||    
T  31785480 tgagtatgagagagaaagttttcataaagtggttgtacaaatatcatttctct 31785532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 35592787 - 35592823
Alignment:
Q  25 aaaagtggttgtacagatatcatttctctaataataa 61  Q
    |||||||||||| ||||||||||||||||||||||||    
T  35592787 aaaagtggttgtgcagatatcatttctctaataataa 35592823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40108186 - 40108134
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| | |||||||||||    
T  40108186 tgagtatgagagagaaagttgtataaaaatggttgtacaaacatcatttctct 40108134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27866546 - 27866597
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||| ||||||||  |||| |||||||||| ||||||||||||    
T  27866546 tgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 27866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33465048 - 33465099
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||| ||||  |||| |||||||||| ||||||||||||    
T  33465048 tgagtatgagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 33465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21839142 - 21839195
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||| ||||||||  ||||||||||||| | ||||||||| ||||    
T  21839142 tgagtatgagagataaagttgtcaaaaagtggttgtataaatatcatttttcta 21839195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27570406 - 27570353
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    |||||||||||||||||||| || |||| | ||||| || ||||||||||||||    
T  27570406 tgagtatgagagagaaagttattaaaaaatagttgttcaaatatcatttctcta 27570353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 37848631 - 37848680
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||  |||| || ||||||| ||||||||||||    
T  37848631 agtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 37848680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 44196238 - 44196279
Alignment:
Q  11 agagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||| |||||||| |||||| ||||||||||||    
T  44196238 agagaaagttgttaaaaagtggatgtacatatatcatttctc 44196279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 45420073 - 45420126
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataa 58  Q
    ||||||||||||||||||  |||| | ||||| || ||||||||||||||||||    
T  45420073 tatgagagagaaagttgtcaaaaaatagttgttcaaatatcatttctctaataa 45420126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 48314395 - 48314432
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  48314395 aaagttgttaaaaagtggttgtacaaatatcatttctc 48314432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49142526 - 49142579
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||||||| || |  |||| |||||||||| ||||||||||||||    
T  49142526 tgagtatgagagagaaaattttacaaaaatggttgtacaaatatcatttctcta 49142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2323355 - 2323303
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| | |||||||| |||||||||||||    
T  2323355 tgagtatgagagagaaagttgtcataaaattgttgtacaaatatcatttctct 2323303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41985109 - 41985161
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| || ||||||| |||||||||||||    
T  41985109 tgagtatgagagagaaagttgtcacaaattgattgtacaaatatcatttctct 41985161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48490522 - 48490576
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  48490522 tgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcatttctctaa 48490576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29846900 - 29846952
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  29846900 tgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 29846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29057710 - 29057659
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  29057710 tgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47683852 - 47683798
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||   ||| |||||||||| |||||||||||||||    
T  47683852 tgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctctaa 47683798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35368673 - 35368621
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| | |||||||| |||||||||||||    
T  35368673 tgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46953000 - 46952948
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||| |  |||| |||||||||| |||||||||||||    
T  46953000 tgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttctct 46952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50745611 - 50745559
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| || ||||||| |||||||||||||    
T  50745611 tgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctct 50745559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9719461 - 9719512
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||||||| |||| ||||  ||||||||||||||| ||||||||||||    
T  9719461 tgagtatgagagggaaaattgtcaaaaagtggttgtacaaatatcatttctc 9719512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 28300693 - 28300727
Alignment:
Q  26 aaagtggttgtacagatatcatttctctaataata 60  Q
    |||||||||||||| ||||||||||||||||||||    
T  28300693 aaagtggttgtacaaatatcatttctctaataata 28300727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35554124 - 35554174
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||||||  ||||||| || |||| |||||||||||    
T  35554124 tgagtatgagagagaaagttgtcaaaaagtgattatacaaatatcatttct 35554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 50876371 - 50876425
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||| ||||||||||||  |||| | |||||||| |||||||||||||||    
T  50876371 tgagtatgatagagaaagttgtcaaaaaattgttgtacaaatatcatttctctaa 50876425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3484821 - 3484761
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataa 61  Q
    ||||||||||||||||||||||   ||| |||||| ||| |||||||||||| || |||||    
T  3484821 tgagtatgagagagaaagttgtaataaaatggttggacaaatatcatttctccaaaaataa 3484761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23906996 - 23907048
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   | | |||||||||| |||||||||||||    
T  23906996 tgagtatgagagagaaagttgtaacataatggttgtacaaatatcatttctct 23907048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28700523 - 28700471
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  |||| ||||||| || |||||||||||||    
T  28700523 tgagtatgagagataaagttgtcaaaaaatggttgttcaaatatcatttctct 28700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36318291 - 36318343
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||| ||||  |||||||| | |||| |||||||||||||    
T  36318291 tgagtatgagagagaaaattgtcaaaaagtggatatacaaatatcatttctct 36318343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38957521 - 38957580
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataa 61  Q
    ||||||||||||| ||||||||  |||| | |||||||| ||||||||||||||| |||||    
T  38957521 tgagtatgagagaaaaagttgtcaaaaa-tagttgtacaaatatcatttctctaaaaataa 38957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 42718179 - 42718127
Alignment:
Q  5 tatgagagagaaagttgttga-aaagtggttgtacagatatcatttctctaat 56  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||||| ||||    
T  42718179 tatgagagagaaagttgttaataaaatggttgtacaaatatcatttctttaat 42718127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 43169762 - 43169814
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||   ||| |||||||||| |||||||||||||    
T  43169762 tgagtatgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctct 43169814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48117398 - 48117346
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||  |||| |||||||| | |||||||||||||    
T  48117398 tgagtatgaaagagaaagttgtacaaaaatggttgtataaatatcatttctct 48117346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49361844 - 49361896
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  |||| || ||||||| |||||||||||||    
T  49361844 tgagtatgagagaaaaagttgtacaaaaatgattgtacaaatatcatttctct 49361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 55361242 - 55361294
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||| ||||||||||||||  | || |||||||||| |||||||||||||    
T  55361242 tgagtataagagagaaagttgtcaagaaatggttgtacaaatatcatttctct 55361294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42490971 - 42490919
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  42490971 tgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 42490919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24310530 - 24310581
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  24310530 tgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 48494924 - 48494974
Alignment:
Q  4 gtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    |||||||||| ||||||||| |||||||||||| || ||||||||||||||    
T  48494924 gtatgagagataaagttgttaaaaagtggttgttcaaatatcatttctcta 48494974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 30973648 - 30973591
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataa 58  Q
    ||||||||| ||| ||||||||   |||||||||||||| ||||||||||||||||||    
T  30973648 tgagtatgaaagaaaaagttgtcataaagtggttgtacaaatatcatttctctaataa 30973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1868902 - 1868954
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||| ||||||||||  |||| |||||||||| |||||||||||||    
T  1868902 tgagtatgagatagaaagttgtacaaaaatggttgtacaaatatcatttctct 1868954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 4974159 - 4974111
Alignment:
Q  4 gtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  4974159 gtatgagagagaaagttgttaaaaaatagttgtacaaatatcatttctc 4974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46173601 - 46173549
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||| |||||||||||||||   |||||||||||||| |||||||||||||    
T  46173601 tgagtacgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 46173549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46686295 - 46686244
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  46686295 tgagtatgagagagaaagttgtacaaaa-tggttgtacaaatatcatttctct 46686244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39241310 - 39241361
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||   ||| |||||||||| ||||||||||||    
T  39241310 tgagtatgagagagaaagttgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5386435 - 5386385
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||||||  |||| ||||||| || |||||||||||    
T  5386435 tgagtatgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 5386385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 31413797 - 31413847
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||  |||| | |||||||| |||||||||||||    
T  31413797 agtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 31413847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 41119497 - 41119543
Alignment:
Q  8 gagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    |||||||||||||||   |||||||||||||| ||||||||||||||    
T  41119497 gagagagaaagttgtcacaaagtggttgtacaaatatcatttctcta 41119543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2109494 - 2109441
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||| ||||||||||||  |||  |||||||||| ||||||||||||||    
T  2109494 tgagtatgaaagagaaagttgtcaaaagatggttgtacaaatatcatttctcta 2109441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 7795074 - 7795025
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||| ||||||||||  |||| |||||||||| ||||||||||||    
T  7795074 agtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttctc 7795025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9827992 - 9828045
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||| ||||||||||||||||   ||| |||||||||| ||||||||||||||    
T  9827992 tgagtgtgagagagaaagttgtactaaaatggttgtacaaatatcatttctcta 9828045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39606029 - 39605977
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||||||||||| | |||| ||||||| || ||||||||||||||    
T  39606029 tgagtatgagagagaaagttg-tcaaaaatggttgttcatatatcatttctcta 39605977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50980653 - 50980600
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    |||||||||||||||| ||||||  ||| || ||||||| ||||||||||||||    
T  50980653 tgagtatgagagagaaggttgttagaaaatgattgtacaaatatcatttctcta 50980600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4511876 - 4511824
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| ||||| |||| |||||||||||||    
T  4511876 tgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctct 4511824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5234480 - 5234532
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||| |   |||||| ||||||| |||||||||||||    
T  5234480 tgagtatgagagagaaagttatcacaaagtgattgtacaaatatcatttctct 5234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7146144 - 7146192
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||| |||| ||||||| || |||||||||||||    
T  7146144 tatgagagaaaaagttgtttaaaaatggttgttcaaatatcatttctct 7146192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11997736 - 11997676
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataa 61  Q
    ||||||||| | | ||||||||   |||||||||||||| |||||||||||| ||||||||    
T  11997736 tgagtatgaaaaataaagttgtcacaaagtggttgtacaaatatcatttctcaaataataa 11997676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 27384234 - 27384186
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||   ||| |||||||||| |||||||||||||    
T  27384234 tatgagagagaaagttgtaataaaatggttgtacaaatatcatttctct 27384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28480547 - 28480599
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||   |||||||||||| | |||||||||||||    
T  28480547 tgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctct 28480599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28481421 - 28481473
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||   |||||||||||| | |||||||||||||    
T  28481421 tgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctct 28481473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28482296 - 28482348
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||   |||||||||||| | |||||||||||||    
T  28482296 tgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctct 28482348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28657449 - 28657509
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataa 61  Q
    ||||||||||||||||||||||   ||| ||| ||| || ||||||||||||| |||||||    
T  28657449 tgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctcttataataa 28657509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37022323 - 37022271
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||   ||| |||||||||| |||||||||||||    
T  37022323 tgagtatgagagataaagttgtatcaaaatggttgtacaaatatcatttctct 37022271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 38134006 - 38133970
Alignment:
Q  26 aaagtggttgtacagatatcatttctctaataataat 62  Q
    |||||||||||||| |||| |||||||||||||||||    
T  38134006 aaagtggttgtacaaatataatttctctaataataat 38133970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 39844302 - 39844330
Alignment:
Q  25 aaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||||||||||||    
T  39844302 aaaagtggttgtacagatatcatttctct 39844330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48326603 - 48326555
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||||| ||||||||   |||||||||||||| |||||||||    
T  48326603 tgagtatgagagaaaaagttgtcacaaagtggttgtacaaatatcattt 48326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54036538 - 54036590
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||   ||| |||||||||| |||||||||||||    
T  54036538 tgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 54036590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 14983831 - 14983783
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  14983831 tatgagagagaaagttgttaaaaagtggttgtacaaatatcatttctct 14983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45272169 - 45272221
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  45272169 tgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 45272221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5975599 - 5975545
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||  |||||||| |||||| |||||||||||||||    
T  5975599 tgagtatgagagagaaagttgtcaaaaagtggatgtacatatatcatttctctaa 5975545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 38913647 - 38913597
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  38913647 agtatgagagagaaagttgtgagaaagtggttgtacagatatcatttctct 38913597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11121543 - 11121491
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||||| |||||||| |||||||||||||    
T  11121543 tgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcatttctct 11121491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49453542 - 49453490
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  49453542 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 49453490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 51571462 - 51571416
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  51571462 tatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttct 51571416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5477172 - 5477220
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||    
T  5477172 tgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 5477220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30414926 - 30414874
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||| |||||  |||| |||||||||| |||||||||||||    
T  30414926 tgagtatgagagagaaggttgtacaaaaatggttgtacaaatatcatttctct 30414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40596063 - 40596115
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| |||||||||| |||||||||||||    
T  40596063 tgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctct 40596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46903532 - 46903480
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| |||||||||| |||||||||||||    
T  46903532 tgagtatgagagagaaagttgtatcaaaatggttgtacaaatatcatttctct 46903480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 49241513 - 49241569
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaata 57  Q
    ||||||||||||||||||||||   ||||||| ||| || |||||||||||||||||    
T  49241513 tgagtatgagagagaaagttgtcacaaagtggatgttcaaatatcatttctctaata 49241569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16252768 - 16252819
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||| ||||||||||||  |||| |||||||||| ||||||||||||    
T  16252768 tgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16252819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40139177 - 40139126
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||   ||| |||||||||| ||||||||||||    
T  40139177 tgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41507203 - 41507254
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||   ||| |||||||||| ||||||||||||    
T  41507203 tgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 47386817 - 47386871
Alignment:
Q  4 gtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataa 58  Q
    |||| ||||| |||||||||  ||| |||||||||| ||||||||||||||||||    
T  47386817 gtataagagataaagttgttataaaatggttgtacaaatatcatttctctaataa 47386871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50460721 - 50460771
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||| ||||||||||  |||| |||||||||| |||||||||||    
T  50460721 tgagtatgagaaagaaagttgtacaaaaatggttgtacaaatatcatttct 50460771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 4857968 - 4857919
Alignment:
Q  6 atgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    |||||||||||||||||  ||||||| |||| || |||||||||||||||    
T  4857968 atgagagagaaagttgtcaaaaagtgattgttcaaatatcatttctctaa 4857919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29264064 - 29264015
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||| ||||||||||   |||||||||||||| ||||||||||||    
T  29264064 agtatgagaaagaaagttgtcataaagtggttgtacaaatatcatttctc 29264015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 35030773 - 35030822
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||  |||| |||||||||| ||| ||||||||    
T  35030773 agtatgagagagaaagttgtacaaaaatggttgtacaaataacatttctc 35030822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 43612092 - 43612141
Alignment:
Q  4 gtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||   ||| |||||||||| |||||||||||||    
T  43612092 gtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctct 43612141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43757650 - 43757597
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||| ||||||||||||   ||| |||||||||| ||||||||||||||    
T  43757650 tgagtatgaaagagaaagttgtatcaaaatggttgtacaaatatcatttctcta 43757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 48872043 - 48872088
Alignment:
Q  7 tgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||  |||| |||||||||| ||||||||||||    
T  48872043 tgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctc 48872088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 3826828 - 3826876
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||| |||| | |||||||| |||||||||||||    
T  3826828 tatgagagataaagttgttaaaaattagttgtacaaatatcatttctct 3826876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4154643 - 4154591
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  ||||||   |||||| |||||||||||||    
T  4154643 tgagtatgagagagaaagttgtcaaaaagtaaatgtacatatatcatttctct 4154591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 10385469 - 10385421
Alignment:
Q  10 gagagaaagttgttgaaaagtggttgtacagatatcatttctctaataa 58  Q
    ||||||||||||| | ||| |||||||||| ||||||||||||| ||||    
T  10385469 gagagaaagttgtagcaaaatggttgtacaaatatcatttctcttataa 10385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27687528 - 27687580
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||   ||| |||||||||| |||||||||||||    
T  27687528 tgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctct 27687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31480128 - 31480180
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||| |   ||||||| |||||| |||||||||||||    
T  31480128 tgagtatgagagagaaagttatcacaaagtggatgtacatatatcatttctct 31480180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 38303697 - 38303749
Alignment:
Q  2 gagtatgagagagaaagttgttg-aaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||| |||||| | ||| || |||||||||||||    
T  38303697 gagtatgagagagaaagttgttgtaaaagttgatgttcaaatatcatttctct 38303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49589983 - 49590035
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||| | ||||||||   |||||||||||||| |||||||||||||    
T  49589983 tgagtatgagataaaaagttgtaataaagtggttgtacaaatatcatttctct 49590035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50797842 - 50797790
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||| || ||||||| |||||||||||||    
T  50797842 tgagtatgagagagaaagttgtcacaaaatgattgtacaaatatcatttctct 50797790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3280 - 3332
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   |||||||||||||| |||||||||||||    
T  3280 tgagtatgagagagaaagttgtgagaaagtggttgtacaaatatcatttctct 3332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31609 - 31661
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  31609 tgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 31661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5740794 - 5740846
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||||||||    
T  5740794 tgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcatttctct 5740846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7325777 - 7325725
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||||||  ||||||| |||||| |||||||||||||    
T  7325777 tgagtatgagagagaaagttgttataaagtggatgtacaaatatcatttctct 7325725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37392137 - 37392189
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||||||||||    
T  37392137 tgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctct 37392189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1370294 - 1370345
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||| ||||||||||||||  |||||||||||||| ||||||||||||    
T  1370294 tgagtatgtgagagaaagttgttacaaagtggttgtacaaatatcatttctc 1370345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32777947 - 32777896
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||| ||||||||||||||  |||| |||||||||||||||||||||||    
T  32777947 tgagtataagagagaaagttgtataaaaatggttgtacagatatcatttctc 32777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 9047084 - 9047130
Alignment:
Q  6 atgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||    
T  9047084 atgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctc 9047130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 5502418 - 5502369
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||||||||   |||||||||||||| ||||||||||||||    
T  5502418 tatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctcta 5502369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 324103 - 324155
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||  |||||||| |||||| |||||||||||||    
T  324103 tgagtatgacagagaaagttgtcaaaaagtggatgtacatatatcatttctct 324155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13924073 - 13924021
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||| |||||||||||||||||  |||| |||||||||| |||||||||||||    
T  13924073 tgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctct 13924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18538437 - 18538385
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  |||||||||||||||  ||||||||||||    
T  18538437 tgagtatgagagataaagttgtcaaaaagtggttgtacaagtatcatttctct 18538385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1796547 - 1796496
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||| ||||||||||   |||||||||||||| ||||||||||||    
T  1796547 tgagtatgagaaagaaagttgtcacaaagtggttgtacaaatatcatttctc 1796496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6243096 - 6243045
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| || ||||||| ||||||||||||    
T  6243096 tgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 6243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 14233654 - 14233705
Alignment:
Q  2 gagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||||  |||| | |||||||| |||||||||||||    
T  14233654 gagtatgagagagaaagttgtaaaaaaatagttgtacaaatatcatttctct 14233705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36675387 - 36675336
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||| ||||||||  |||| |||||||||| ||||||||||||    
T  36675387 tgagtatgagagaaaaagttgtacaaaaatggttgtacaaatatcatttctc 36675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41776237 - 41776186
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| | |||||||| ||||||||||||    
T  41776237 tgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44103827 - 44103776
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||   |||||||||||||| |||| |||||||    
T  44103827 tgagtatgagagagaaagttgtcataaagtggttgtacaaatataatttctc 44103776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45081449 - 45081398
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||| ||| ||||| |||| |||||||||| ||||||||||||    
T  45081449 tgagtatgagagacaaaattgttaaaaattggttgtacaaatatcatttctc 45081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 157116 - 157070
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||||    
T  157116 agtatgagagagaaagttgtcgcaaaatggttgtacaaatatcattt 157070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 3155880 - 3155842
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  3155880 aaagttgttaaaaagtggttgtacaaatatcatttctct 3155842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39211104 - 39211054
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||||||  |||| ||||||| || |||||||||||    
T  39211104 tgagtatgagagagaaagttgtcaaaaaatggttgttcaaatatcatttct 39211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 43066628 - 43066666
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  43066628 aaagttgttaaaaagtggttgtacaaatatcatttctct 43066666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7010736 - 7010683
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||||||| ||||  |||| || ||||||| ||||||||||||||    
T  7010736 tgagtatgagagagaaaattgtcaaaaaatgattgtacaaatatcatttctcta 7010683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 21526315 - 21526352
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  21526315 aaagttgttaaaaagtggttgtacaaatatcatttctc 21526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 32020475 - 32020524
Alignment:
Q  2 gagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||||||||| |  |||| |||||||||| |||||||||||    
T  32020475 gagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttct 32020524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 40102060 - 40102015
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctctaataata 60  Q
    ||||||||  ||||||||||||||| ||||||||||||||| ||||    
T  40102060 aaagttgtgaaaaagtggttgtacaaatatcatttctctaaaaata 40102015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45405828 - 45405881
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||| ||||||||   ||| |||||||||| ||||||||||||||    
T  45405828 tgagtatgagagaaaaagttgtatcaaaatggttgtacaaatatcatttctcta 45405881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 895975 - 895935
Alignment:
Q  11 agagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||||||||||  ||||||||||||||| |||||||||||    
T  895975 agagaaagttgtcaaaaagtggttgtacaaatatcatttct 895935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25430708 - 25430656
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||| |||| |||||  |||| |||||||||| |||||||||||||    
T  25430708 tgagtatgagatagaaggttgtacaaaaatggttgtacaaatatcatttctct 25430656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 26442696 - 26442740
Alignment:
Q  25 aaaagtggttgtacagatatcatttctctaataataattgaaaaa 69  Q
    ||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  26442696 aaaagtgtttgtacaaatatcatttctctaaaaataatggaaaaa 26442740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29108046 - 29107994
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||| | ||||||||||||| |||| || ||||||| |||||||||||||    
T  29108046 tgagtataaaagagaaagttgttaaaaaatgattgtacaaatatcatttctct 29107994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38174242 - 38174294
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaag-tggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  ||||| | |||||||| ||||||||||||    
T  38174242 tgagtatgagagagaaagttgtctaaaagatagttgtacaaatatcatttctc 38174294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38939198 - 38939250
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| | |||||| | |||||||||||||    
T  38939198 tgagtatgagagagaaagttgtacaaaaatagttgtagaaatatcatttctct 38939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42768131 - 42768179
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||||||||| ||||  |||||| |||||||| |||||||||    
T  42768131 tgagtatgagagagaaaattgtcaaaaagtagttgtacaaatatcattt 42768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12427236 - 12427288
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| |||||||||||| ||||||||| |||||| |||||||||||||    
T  12427236 tgagtatgaaagagaaagttgtcgaaaagtggatgtacaaatatcatttctct 12427288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31517189 - 31517241
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  ||||||||||||||| |||||||||||||    
T  31517189 tgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcatttctct 31517241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2241827 - 2241880
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctcta 54  Q
    ||||||||||||| ||||||||  ||||||||||||| | ||||||||||||||    
T  2241827 tgagtatgagagaaaaagttgtcaaaaagtggttgtataaatatcatttctcta 2241880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1196109 - 1196057
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||| ||||||||||||||  ||||||| ||||||| |||||||||||||    
T  1196109 tgagtattagagagaaagttgtcaaaaagtgattgtacaaatatcatttctct 1196057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12441589 - 12441537
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||   ||||| |||||||| |||||||||||||    
T  12441589 tgagtatgagagagaaagttgtcacaaagtagttgtacaaatatcatttctct 12441537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 2165310 - 2165361
Alignment:
Q  2 gagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||| ||||||||  |||| |||||||||| |||||||||||||    
T  2165310 gagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 2165361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 2176943 - 2176994
Alignment:
Q  2 gagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||| ||||||||  |||| |||||||||| |||||||||||||    
T  2176943 gagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 2176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32644674 - 32644623
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| | |||||||| ||||||||||||    
T  32644674 tgagtatgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 32149549 - 32149499
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||   |||||||||||||| |||| ||||||||    
T  32149549 agtatgagagagaaagttgtcacaaagtggttgtacaaatattatttctct 32149499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 16121212 - 16121163
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||| ||||||||||||  |||| |||||||||| ||||||||||||    
T  16121212 agtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6158789 - 6158841
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  |||||||  |||||| |||||||||||||    
T  6158789 tgagtatgagagataaagttgtcaaaaagtgaatgtacatatatcatttctct 6158841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16328714 - 16328762
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||| |||||||||  ||| |||||||||| |||||||||||||    
T  16328714 tatgagagataaagttgttataaaatggttgtacaaatatcatttctct 16328762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17442884 - 17442832
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||| ||||||||||||||  |||| |||||||||| |||| ||||||||    
T  17442884 tgagtataagagagaaagttgtacaaaaatggttgtacaaatattatttctct 17442832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25567499 - 25567551
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||| ||||||||  |||| |||||||||  |||||||||||||    
T  25567499 tgagtatgagagataaagttgtacaaaaatggttgtacgaatatcatttctct 25567551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42081099 - 42081047
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  42081099 tgagtatgagagagaaagttgtcaaaaagtggctgtacaaatatcatttctct 42081047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10550468 - 10550523
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaat 56  Q
    ||||||||||||||||||||||  |||| | |||||||| ||||||||||||||||    
T  10550468 tgagtatgagagagaaagttgtgaaaaaatagttgtacatatatcatttctctaat 10550523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 44423027 - 44422981
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||    
T  44423027 agtatgaaagagaaagttgttaaaaagtggttgtacaaatatcattt 44422981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 8482245 - 8482293
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||   |||||||||||||| |||||||||||||    
T  8482245 tatgagagagaaagttgtcataaagtggttgtacaaatatcatttctct 8482293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28014018 - 28013966
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||  |||| |||||||||| |||| ||||||||    
T  28014018 tgagtatgagagagaaagttgtcaaaaattggttgtacaaatataatttctct 28013966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7121441 - 7121390
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||||||||||||||||||  ||| ||||| |||| ||||||||||||    
T  7121441 tgagtatgagagagaaagttgttacaaaatggttatacaaatatcatttctc 7121390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22296138 - 22296193
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaat 56  Q
    ||||||| ||||||||| ||||  |||| |||||||||| ||||||||||||||||    
T  22296138 tgagtatcagagagaaaattgtacaaaaatggttgtacaaatatcatttctctaat 22296193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24727477 - 24727426
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||   ||| |||||||||| ||||||||||||    
T  24727477 tgagtatgagagagaaagttgtaccaaaatggttgtacaaatatcatttctc 24727426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37737986 - 37738036
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    |||||||||||||||||||||| ||||| ||||||| || ||||||||||||    
T  37737986 tgagtatgagagagaaagttgtcgaaaa-tggttgttcaaatatcatttctc 37738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38600876 - 38600825
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||||||  |||| ||| |||||| ||||||||||||    
T  38600876 tgagtatgagagagaaagttgtcaaaaaatggatgtacatatatcatttctc 38600825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 45202145 - 45202192
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcatttctc 52  Q
    ||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  45202145 tatgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37966418 - 37966364
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||| ||||||||   ||| |||||||||| |||||||||||||||    
T  37966418 tgagtatgagagaaaaagttgtcacaaattggttgtacaaatatcatttctctaa 37966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40496412 - 40496358
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||||||||||||||||  |||||||| | |||| |||||||| ||||||    
T  40496412 tgagtatgagagagaaagttgtcaaaaagtggatttacatatatcattactctaa 40496358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27538925 - 27538986
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataataat 62  Q
    ||||||| | ||||||||||||  |||| |||||||||| ||||||||||||  ||||||||    
T  27538925 tgagtatcatagagaaagttgtacaaaaatggttgtacaaatatcatttctcatataataat 27538986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29795498 - 29795441
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaataa 58  Q
    |||||||| |||||||||||||   ||| |||||||||| ||||||||||||| ||||    
T  29795498 tgagtatgtgagagaaagttgtcacaaaatggttgtacaaatatcatttctcttataa 29795441  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 44058780 - 44058727
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctctaat 56  Q
    |||||||||||||| ||| || |||| || ||||||| ||||||||||||||||    
T  44058780 agtatgagagagaacgttattaaaaaatgattgtacaaatatcatttctctaat 44058727  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 4036910 - 4036950
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||| |||||| |||||||| |||||||||||||||    
T  4036910 aaagttgttaaaaagtagttgtacaaatatcatttctctaa 4036950  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4138194 - 4138246
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||||||  ||| | ||| |||| |||||||||||||    
T  4138194 tgagtatgagagagaaagttgttagaaaatagttatacaaatatcatttctct 4138246  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5191703 - 5191755
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||||||||||| ||||||   ||||||  ||||||||||||    
T  5191703 tgagtatgagagagaaagttgttaaaaagtaaatgtacatctatcatttctct 5191755  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 11828833 - 11828877
Alignment:
Q  5 tatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||||||||||  |||| |||||||||| |||||||||    
T  11828833 tatgagagagaaagttgtacaaaaatggttgtacaaatatcattt 11828877  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 19695708 - 19695752
Alignment:
Q  9 agagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    ||||||||||||||  ||||||| ||||||| |||||||||||||    
T  19695708 agagagaaagttgtcaaaaagtgattgtacaaatatcatttctct 19695752  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40700258 - 40700206
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||||||||||||||  ||| | |||||||| ||| |||||||||    
T  40700258 tgagtatgagagagaaagttgttataaaatagttgtacaaataccatttctct 40700206  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 43057101 - 43057061
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||| |||||||||||| || |||||||||||||||    
T  43057101 aaagttgttaaaaagtggttgttcaaatatcatttctctaa 43057061  T

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Target: scaffold0286 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 17099 - 17048
Alignment:
Q  2 gagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||||||||||| ||||||||  |||| |||||||||| |||||||||||||    
T  17099 gagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctct 17048  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 71599 - 71645
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcattt 49  Q
    ||||||||||| ||||||||| ||| ||||||||||| |||||||||    
T  71599 agtatgagagataaagttgttcaaaggtggttgtacaaatatcattt 71645  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 11207 - 11159
Alignment:
Q  3 agtatgagagagaaagttgttgaaaagtggttgtacagatatcatttct 51  Q
    ||||| ||||| ||||||||| |||| |||||||||| |||||||||||    
T  11207 agtataagagataaagttgttcaaaaatggttgtacaaatatcatttct 11159  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29781 - 29833
Alignment:
Q  1 tgagtatgagagagaaagttgttgaaaagtggttgtacagatatcatttctct 53  Q
    |||| |||||| ||||||||||  ||||||||||||| | |||||||||||||    
T  29781 tgagcatgagaaagaaagttgtcaaaaagtggttgtataaatatcatttctct 29833  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 15222 - 15262
Alignment:
Q  15 aaagttgttgaaaagtggttgtacagatatcatttctctaa 55  Q
    ||||||||| ||||||| ||||||| |||||||||||||||    
T  15222 aaagttgttaaaaagtgattgtacaaatatcatttctctaa 15262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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