View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_high_31 (Length: 248)
Name: NF17883_high_31
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41557852 - 41557619
Alignment:
| Q |
1 |
atgatgattgcgataaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatga |
100 |
Q |
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| T |
41557852 |
atgatgattgcgataaatgatgaatgtgagatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatga |
41557753 |
T |
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| Q |
101 |
ggatgatcggtgattttctgttggttaggttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgagattgaatagttaaggttagggaaa |
200 |
Q |
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| T |
41557752 |
ggatgatcggtgattttctgttggttaggttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgagattgaatagttaaggttagggaaa |
41557653 |
T |
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| Q |
201 |
ttcagaatctggtgtttgtgaagaagaagaagaa |
234 |
Q |
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| T |
41557652 |
ttcagaatctggtgtttgtgaagaagaagaagaa |
41557619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 245
Target Start/End: Complemental strand, 41542067 - 41541857
Alignment:
| Q |
30 |
gatttgagataagaatggaacgaaccagttggaatctgaaagagtacagtgatttttgaatcgatcgatgaggatgatcggtgattttctgttggttagg |
129 |
Q |
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| T |
41542067 |
gatttgagattagaagagaacgaaccagttggaatctgaaagagtacagtgatttctgaatcgattgatgagaatgatcgatgagtttccgttggtgaga |
41541968 |
T |
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| Q |
130 |
ttaactagcaaacttcgagtgaaaactgaattgaaaaaacgaatgagattgaatagttaaggttagggaaattcagaatctggtgtttgtgaagaagaag |
229 |
Q |
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| T |
41541967 |
ttgatgagtaaacttcgagtgaattctgaactg-aaaaacgaatga-attgaattattaggtttagggaaattgaatatctgaag---aggaagaagaag |
41541873 |
T |
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| Q |
230 |
aagaacctttgatttt |
245 |
Q |
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| T |
41541872 |
aagaacctttgatttt |
41541857 |
T |
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