View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17883_high_36 (Length: 231)
Name: NF17883_high_36
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 3058915 - 3058709
Alignment:
| Q |
10 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058915 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
3058816 |
T |
|
| Q |
110 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3058815 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
3058716 |
T |
|
| Q |
210 |
tgtaaat |
216 |
Q |
| |
|
||||||| |
|
|
| T |
3058715 |
tgtaaat |
3058709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 17443285 - 17443491
Alignment:
| Q |
10 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443285 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
17443384 |
T |
|
| Q |
110 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17443385 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
17443484 |
T |
|
| Q |
210 |
tgtaaat |
216 |
Q |
| |
|
||||||| |
|
|
| T |
17443485 |
tgtaaat |
17443491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 4873558 - 4873352
Alignment:
| Q |
10 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873558 |
acatcatcattcacagcagagtgaaggatggtaagagccttagctctcttggcaacttgctcactgtggtatctcatttgagcaacagttggattttctt |
4873459 |
T |
|
| Q |
110 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4873458 |
gcaaaggtggtggttcagcagctgtttccaccacttcccaaagatcatatgccctcaaatgagtcttcatcttcacagaccagatttcatatttctttcc |
4873359 |
T |
|
| Q |
210 |
tgtaaat |
216 |
Q |
| |
|
||||||| |
|
|
| T |
4873358 |
tgtaaat |
4873352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University