View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_high_5 (Length: 522)
Name: NF17883_high_5
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 11 - 507
Target Start/End: Original strand, 52383832 - 52384326
Alignment:
| Q |
11 |
cagagattcagtttagcttgttgaactcaattcgatactaacttataatgtatatcatctattttcgacatgaatctcattttgaattctgattcattat |
110 |
Q |
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| T |
52383832 |
cagagattcagtttagcttgttgaactcaattcgatactaacttataatgtatatc---tattttcgacatgaatctcattttgaattctgattcattat |
52383928 |
T |
|
| Q |
111 |
gatctattctgaccaacaactatctagacttaaagcagtcgatcacnnnnnnn-gttcaaatttgtacgacaatataaccaactacttttcttttgtcat |
209 |
Q |
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| T |
52383929 |
gatctattctgaccaacaactatctagacttaaagcagtcgatcacttttttttgttcaaatttgtaggacaatataaccaactacttttcttttgtcat |
52384028 |
T |
|
| Q |
210 |
ttgtttatctcagcaacttattggtaatgtatcttacgattcacaatttgaaaaataagtcattcctaatgactaatagaattttgatttgataaccatg |
309 |
Q |
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| T |
52384029 |
ttgtttatctcagcaacttattggtaatgtatcttacgattcacaatttgaaaaataagtctttcctgatgactaatagaattttgatttgataaccatg |
52384128 |
T |
|
| Q |
310 |
gtcgtgtccacataataaattctatcttgaaaactagtacacttaattattttaagggacatgcataatttgagatggagaaagtatcgaaggaaccgcc |
409 |
Q |
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| T |
52384129 |
gtcgtgtccacataataaattctatcttgaaaactagtacacttaattattttaagggacatgcataatttgagatggagaaagtatcgaaggaaccgcc |
52384228 |
T |
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| Q |
410 |
tacctctttctgtgacaatgcctgctatttgctggccttctggcttcagtaccaccaatgatccgatatcattttcagccatctaaaacattatatat |
507 |
Q |
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| T |
52384229 |
tacctctttctgtgacaatgcctgctatttgctggccttctggcttcagtaccaccaatgatccgatatcattttcagccatctaaaacattatatat |
52384326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 25093409 - 25093449
Alignment:
| Q |
77 |
gacatgaatctcattttgaattctgattcattatgatctat |
117 |
Q |
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|||||||||||||| |||||| |||||||||||||||||| |
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| T |
25093409 |
gacatgaatctcatcttgaatgttgattcattatgatctat |
25093449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 35590629 - 35590583
Alignment:
| Q |
67 |
atctattttcgacatgaatctcattttgaattctgattcattatgat |
113 |
Q |
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| T |
35590629 |
atctatttttgacacgattctcatcttgaattctgattcattatgat |
35590583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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