View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_high_6 (Length: 503)

Name: NF17883_high_6
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_high_6
NF17883_high_6
[»] chr3 (2 HSPs)
chr3 (19-488)||(48235636-48236105)
chr3 (204-419)||(50439335-50439550)
[»] chr1 (2 HSPs)
chr1 (30-484)||(3686406-3686860)
chr1 (204-418)||(1273956-1274170)
[»] chr2 (3 HSPs)
chr2 (345-416)||(45728271-45728342)
chr2 (168-289)||(42673868-42673989)
chr2 (372-413)||(42674072-42674113)
[»] chr8 (2 HSPs)
chr8 (182-289)||(6516733-6516840)
chr8 (369-409)||(6516920-6516960)
[»] scaffold0229 (1 HSPs)
scaffold0229 (296-418)||(56-178)


Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 48236105 - 48235636
Alignment:
Q  19 taagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236105 taagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaaga 48236006  T
Q  119 tagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236005 tagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaaca 48235906  T
Q  219 aagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235905 aagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattag 48235806  T
Q  319 ttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgtt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235805 ttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgtt 48235706  T
Q  419 aacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235705 aacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatg 48235636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 419
Target Start/End: Complemental strand, 50439550 - 50439335
Alignment:
Q  204 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcg 303  Q
    ||||||||||||||||| ||||| || || || ||| ||||| | ||||||  |||||| ||| |||||| ||| || ||   |||| |   |||||| |    
T  50439550 ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg 50439451  T
Q  304 gtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatca 403  Q
    || | |||||| | ||||| || ||||| || ||||| ||||| ||||||  ||||||  || | || |||||||| |||||||| ||||| ||||||||    
T  50439450 gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatca 50439351  T
Q  404 acaaacaggaatgtta 419  Q
     |||||||||||||||    
T  50439350 gcaaacaggaatgtta 50439335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 30 - 484
Target Start/End: Original strand, 3686406 - 3686860
Alignment:
Q  30 agacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttc 129  Q
    |||||||| |||||||||||||||||||| |||||||  ||  || | |||||||| ||||| |||||||| || |||| ||||||||| ||||||||      
T  3686406 agacatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatggtagcttagaagacagattattaa 3686505  T
Q  130 ggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagcc 229  Q
    | |||   ||| |    ||  |  |||||| |||| | ||| |||||||   ||| |||||||| |||||||||||||||||||||||||| |||||  |    
T  3686506 gaaaacgaaacacccctccaattccatggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttccttcaccaaacaaaaccagaagc 3686605  T
Q  230 aatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttct 329  Q
    ||| || ||| |||||||||||||| | |||||| | |||||||||||||  || |||||| |   |||||| ||| | ||||||||||| || ||||||    
T  3686606 aattgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgttagcaaaataagtgatgttggtttagcaagattagtaccaccttct 3686705  T
Q  330 gtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaat 429  Q
    ||||||||    || ||||||||| ||||||||  ||| ||||||||||| ||||| |||||||| ||||||||| | |||||||  |||||| ||||||    
T  3686706 gtagctgattctgtcacacaatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaaaatacaggaaaattaacaacaaaat 3686805  T
Q  430 cagatatatattcattagggataatgctactgcagataatcacagccaggcctcc 484  Q
    ||||||| ||||| |||||||||||| | || || || |||||||| | ||||||    
T  3686806 cagatatttattctttagggataatgtttcttcaaattatcacagctaagcctcc 3686860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 418
Target Start/End: Original strand, 1273956 - 1274170
Alignment:
Q  204 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaag-tcgctgatgtc 302  Q
    ||||| ||||||||||| || |||||| | || ||| |||||||||||||| ||||||| ||| | |||   || |||||  |||||| |   ||||||     
T  1273956 ttcctccaccaaacaaaacctgagccactagtacatagagaccttaaaccagcaaacatcttgcttgaccgcaactacgtc-gcaaagattagtgatgtt 1274054  T
Q  303 ggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatc 402  Q
    ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || ||||| ||||| |    
T  1274055 ggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtacc 1274154  T
Q  403 aacaaacaggaatgtt 418  Q
    |||| |||||||||||    
T  1274155 aacagacaggaatgtt 1274170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 345 - 416
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
Q  345 acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg 416  Q
    ||||||| || |||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||    
T  45728271 acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg 45728342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 289
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
Q  168 ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt 267  Q
    |||||||||||| | |||||||| || |  ||||||||||||||||| ||||| ||||| ||  | |||||||| || || |||||| |||||||| | |    
T  42673868 ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct 42673967  T
Q  268 tagacaaaaattacgtgagcaa 289  Q
    |||||| ||| ||||| |||||    
T  42673968 tagacagaaactacgtaagcaa 42673989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
Q  372 ggaacattttgttatattgatcccgagtatcaacaaacagga 413  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  42674072 ggaacatttttttatattgatccggagtatcaacaaacagga 42674113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
Q  182 tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac 281  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||| ||||| || ||||| ||  | ||||||  ||||||| | ||||||||||| |||    
T  6516733 tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac 6516832  T
Q  282 gtgagcaa 289  Q
    || |||||    
T  6516833 gttagcaa 6516840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
Q  369 gctggaacattttgttatattgatcccgagtatcaacaaac 409  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  6516920 gctggaacattttgctacattgatcctgagtatcaacaaac 6516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 418
Target Start/End: Original strand, 56 - 178
Alignment:
Q  296 tgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatccc 395  Q
    |||||| ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || |||||     
T  56 tgatgttggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcct 155  T
Q  396 gagtatcaacaaacaggaatgtt 418  Q
    ||||| ||||| |||||||||||    
T  156 gagtaccaacagacaggaatgtt 178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University