View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_10 (Length: 440)
Name: NF17883_low_10
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 34550010 - 34549602
Alignment:
| Q |
18 |
tgccaaaaacttgtgtaaaccaaatccgtgagtctttgtaggtaactctgtaaacactctttgagccttgatgcataccctaacccttgtgataattaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34550010 |
tgccaaaaacttgtgtaaaccaaatccgtgagcctttgtaggtaactctgtaaacactctttgagccttgatgcctaccctaacccttgtgataattaaa |
34549911 |
T |
|
| Q |
118 |
gtgctgt-----gcccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaactcattattttgcatgttccta |
212 |
Q |
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||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
34549910 |
gtgttgtggcccggccctcacccaaagcacattgaatttgacatccattttgtttaagaaagagtaattgccaaacaacttgttatgttgcatgttccta |
34549811 |
T |
|
| Q |
213 |
ggtcttacaaatttcagactcattcacaaaaccactctacccctgctttgattccatacctaccaaactcaaggtcttttctgcgaaggaaccatcaatt |
312 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34549810 |
ggtcttacaaatttcagactcattcactaaaccactctacccctgctttgattccatacctaccaaactcaaggtgttttctgcgaaggaaccatcaatt |
34549711 |
T |
|
| Q |
313 |
aagttgggtggggatatccatcaatgtatatgaaacaagtgcgttaatcatcactatagctatcacaagggttagttaatgtggttaaatttctcaactg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549710 |
aagttgggtggggatatccatcaatgtatatgaaacaa-tgcgttaatcatcattatagctatcacaagggttagttaatgtggttaaatttctcaactg |
34549612 |
T |
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| Q |
413 |
atgtaacgaa |
422 |
Q |
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|||||||||| |
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| T |
34549611 |
atgtaacgaa |
34549602 |
T |
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