View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_low_11 (Length: 427)

Name: NF17883_low_11
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_low_11
NF17883_low_11
[»] chr5 (1 HSPs)
chr5 (1-409)||(28700219-28700629)
[»] chr2 (2 HSPs)
chr2 (12-142)||(43937576-43937703)
chr2 (339-409)||(43937911-43937978)
[»] chr1 (1 HSPs)
chr1 (35-147)||(1610701-1610810)
[»] chr6 (2 HSPs)
chr6 (12-142)||(13122903-13123030)
chr6 (314-390)||(13122664-13122742)
[»] chr3 (1 HSPs)
chr3 (187-253)||(14259387-14259453)
[»] scaffold0001 (2 HSPs)
scaffold0001 (250-409)||(420620-420777)
scaffold0001 (190-253)||(420534-420597)
[»] chr7 (3 HSPs)
chr7 (250-409)||(45341714-45341871)
chr7 (196-255)||(6011156-6011215)
chr7 (14-47)||(45341566-45341599)
[»] chr4 (3 HSPs)
chr4 (250-299)||(16673260-16673309)
chr4 (341-409)||(12458950-12459020)
chr4 (346-409)||(31934231-31934296)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 28700629 - 28700219
Alignment:
Q  1 aatttacggttttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaac 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28700629 aatttacagttttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaac 28700530  T
Q  101 gtttcataaacatatattcatttcaatgacaattaacaactttaagtcgacatgattcacatcttaacataacaaactcttgaacaatatcacattttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  28700529 gtttcataaacatatattcatttcaatgacaattaacaactttaagtcgacatgattcacatcttaacataacaaactcttcaataatatcacattttca 28700430  T
Q  201 attaggcatattagcacataatccattattccatttcacctcgtcaaataatacacatgttcatcactaacatacaatattctcatataattatttcaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28700429 attaggcatattagcacataatccattattccatttcacctcgtcaaataatacacatgttcatcactaacatacaatattatcatataattatttcaaa 28700330  T
Q  301 taggcacaatattatcatcatctgaagaatataaattagaaaattatcatcatcaaagaaatcaccaagt--agtatatatgattcacacttcattatca 398  Q
    |||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  28700329 taggtacaatattatcatcatctcaagaatataaactagaaaattatcatcatcaaagaaatcaccaagtcaagtatatatgattcacacttcattatca 28700230  T
Q  399 tcaccaaaata 409  Q
    |||| ||||||    
T  28700229 tcacaaaaata 28700219  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 43937576 - 43937703
Alignment:
Q  12 ttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaac 111  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||   ||||||| |||||||||||| ||||||||||  || |||||||||||||      
T  43937576 ttcatacttcgtcatgtataagcatcaaatcatattccacctatac--ttatatctacatgttataaag-tcaacaagttttcactaacgtttcataagg 43937672  T
Q  112 atatattcatttcaatgacaattaacaactt 142  Q
    ||||||||||||||| |||||||||||||||    
T  43937673 atatattcatttcaacgacaattaacaactt 43937703  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 43937911 - 43937978
Alignment:
Q  339 gaaaattatcatcatcaaagaaatcaccaagtagtatatatgattcacacttcattatcatcaccaaaata 409  Q
    |||||| ||||||||||||||||||||||   |||| |||| ||||||| ||||| |||||||||||||||    
T  43937911 gaaaatcatcatcatcaaagaaatcacca---agtacatataattcacaattcatcatcatcaccaaaata 43937978  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 1610701 - 1610810
Alignment:
Q  35 atcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaacatatattcatttcaatgacaatt 134  Q
    ||||||| |||||||||||| || |||||  ||||||||||||||||| | |||||| ||  ||||||||||||| |||||||||||||||| | |||||    
T  1610701 atcaaataatattccacatacacctatat--cttcatgttataaagttta-caagtttccgctaacgtttcataagcatatattcatttcaacggcaatt 1610797  T
Q  135 aacaactttaagt 147  Q
    |||||||| ||||    
T  1610798 aacaacttcaagt 1610810  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13123030 - 13122903
Alignment:
Q  12 ttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaac 111  Q
    |||| ||||||||||||||||||||| ||| | ||||||||||| | |||||  | | |||||| ||| |||||||||||  || |||| ||||||||||    
T  13123030 ttcacacttcgtcatgtataaacatcgaattacattccacatatgcctatat--ccttatgttagaaa-ttcaacaagttttcactaacatttcataaac 13122934  T
Q  112 atatattcatttcaatgacaattaacaactt 142  Q
    |||| ||||| |||||||||| |||||||||    
T  13122933 atatgttcatatcaatgacaactaacaactt 13122903  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 13122742 - 13122664
Alignment:
Q  314 atcatcatctgaagaatataaattagaaaattatcatcatcaaagaaatcaccaagt--agtatatatgattcacactt 390  Q
    |||||||||  |||||||||||  |||||||||||||||| ||||||||| |||| |  | ||||||||||||||||||    
T  13122742 atcatcatccaaagaatataaacaagaaaattatcatcattaaagaaatcgccaaatcaaatatatatgattcacactt 13122664  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 14259387 - 14259453
Alignment:
Q  187 atatcacattttcaattaggcatattagcacataatccattattccatttcacctcgtcaaataata 253  Q
    |||||||| |||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||    
T  14259387 atatcacaatttcaattaggcatattagctcataatgcagtattccatttcacctcgttaaataata 14259453  T

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Target: scaffold0001 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 420620 - 420777
Alignment:
Q  250 aatacacatgttcatcactaacatacaatattctcatataattatttcaaataggcacaatattatcatcatctgaagaatataaattagaaaattatca 349  Q
    |||||| || |||||||| ||||||| |||||||||| |||||||||||||||  ||||     |||||||||| |||||||||||   | ||| |||||    
T  420620 aatacaaatattcatcaccaacataccatattctcatgtaattatttcaaataaacaca-----atcatcatctcaagaatataaacggggaaactatca 420714  T
Q  350 tcatcaaagaaatcaccaagt--agtatatatgattcacacttcattatca-tcaccaaaata 409  Q
    ||||||||| |||||  ||||  ||||  ||||||||||||||||| | || |||||||||||    
T  420715 tcatcaaaggaatcattaagtcaagtacctatgattcacacttcatcaccattcaccaaaata 420777  T

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Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 420534 - 420597
Alignment:
Q  190 tcacattttcaattaggcatattagcacataatccattattccatttcacctcgtcaaataata 253  Q
    ||||| |||| |||||||||||||||| ||||| |||| || |||||||||| |||||||||||    
T  420534 tcacactttcgattaggcatattagcatataattcattgtttcatttcaccttgtcaaataata 420597  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 409
Target Start/End: Original strand, 45341714 - 45341871
Alignment:
Q  250 aatacacatgttcatcactaacatacaatattctcatataattatttcaaataggcacaatattatcatcatctgaagaatataaattagaaaattatca 349  Q
    ||||||||| |||||||  || |||||||||||||||||||||||||||||||  ||||     |||||||||| ||||| |||||   |||| ||||||    
T  45341714 aatacacatattcatcatcaagatacaatattctcatataattatttcaaataaacaca-----atcatcatctcaagaaaataaacatgaaatttatca 45341808  T
Q  350 tcatcaaagaaatcaccaag--tagtatatatgattcacacttcattatca-tcaccaaaata 409  Q
    ||||||||  ||||| ||||   |||| ||||||||||| |||||| | || |||||||||||    
T  45341809 tcatcaaatgaatcatcaagccaagtacatatgattcacgcttcatcaccattcaccaaaata 45341871  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 6011215 - 6011156
Alignment:
Q  196 tttcaattaggcatattagcacataatccattattccatttcacctcgtcaaataataca 255  Q
    ||||||||||  ||||| ||||||||| |||| | |||||||||||| ||||||||||||    
T  6011215 tttcaattagatatattggcacataattcattgtcccatttcacctcatcaaataataca 6011156  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 45341566 - 45341599
Alignment:
Q  14 catacttcgtcatgtataaacatcaaatcatatt 47  Q
    ||||||| ||||||||||||||||||||||||||    
T  45341566 catactttgtcatgtataaacatcaaatcatatt 45341599  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 16673309 - 16673260
Alignment:
Q  250 aatacacatgttcatcactaacatacaatattctcatataattatttcaa 299  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16673309 aatacacatgttcatcactaacatacaatattctcatgtaattatatcaa 16673260  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 12458950 - 12459020
Alignment:
Q  341 aaattatcatcatcaaagaaatcaccaagt--agtatatatgattcacacttcattatcatcaccaaaata 409  Q
    |||| ||||||||||||| |||||||||||  ||||||||||||||||| || || | |||||||||||||    
T  12458950 aaatcatcatcatcaaaggaatcaccaagtcaagtatatatgattcacaatttatcaccatcaccaaaata 12459020  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 31934231 - 31934296
Alignment:
Q  346 atcatcatcaaagaaatcaccaagt-ag-tatatatgattcacacttcattatcatcaccaaaata 409  Q
    ||||||||||||||||||||||| | || ||||||||||||||||| |||||  ||||||||||||    
T  31934231 atcatcatcaaagaaatcaccaaatcagatatatatgattcacactccattactatcaccaaaata 31934296  T

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