View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_low_15 (Length: 405)

Name: NF17883_low_15
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_low_15
NF17883_low_15
[»] chr8 (20 HSPs)
chr8 (268-350)||(9431172-9431254)
chr8 (270-338)||(31824961-31825029)
chr8 (268-350)||(45081501-45081584)
chr8 (269-350)||(1158223-1158304)
chr8 (271-350)||(7376625-7376704)
chr8 (129-179)||(11812020-11812070)
chr8 (269-350)||(12659253-12659335)
chr8 (269-350)||(12960040-12960122)
chr8 (270-350)||(40608615-40608696)
chr8 (268-346)||(34299292-34299368)
chr8 (269-350)||(40997761-40997843)
chr8 (3-56)||(5567581-5567634)
chr8 (3-96)||(6428856-6428949)
chr8 (3-56)||(30224385-30224438)
chr8 (3-51)||(36535874-36535922)
chr8 (270-345)||(30608599-30608674)
chr8 (3-57)||(3375457-3375511)
chr8 (14-60)||(31032038-31032084)
chr8 (309-350)||(38504272-38504313)
chr8 (309-350)||(43587743-43587784)
[»] chr2 (11 HSPs)
chr2 (262-350)||(39744475-39744563)
chr2 (267-350)||(14797538-14797621)
chr2 (269-346)||(13465963-13466040)
chr2 (268-350)||(3585728-3585811)
chr2 (100-158)||(3961219-3961277)
chr2 (269-350)||(39737576-39737657)
chr2 (269-350)||(11741925-11742007)
chr2 (268-346)||(43356424-43356502)
chr2 (309-350)||(41715350-41715391)
chr2 (267-350)||(6746320-6746404)
chr2 (3-56)||(29758275-29758328)
[»] chr7 (14 HSPs)
chr7 (1-96)||(28124608-28124703)
chr7 (1-96)||(28126435-28126530)
chr7 (267-350)||(9055369-9055452)
chr7 (268-350)||(2756806-2756888)
chr7 (267-350)||(21037121-21037205)
chr7 (1-96)||(4895700-4895794)
chr7 (1-60)||(28014294-28014353)
chr7 (3-60)||(20046518-20046575)
chr7 (101-148)||(3458824-3458871)
chr7 (3-56)||(44963318-44963371)
chr7 (269-345)||(21153159-21153235)
chr7 (1-60)||(25471792-25471851)
chr7 (26-88)||(29598018-29598081)
chr7 (269-350)||(41966430-41966511)
[»] chr1 (13 HSPs)
chr1 (1-96)||(16808599-16808694)
chr1 (268-350)||(3605982-3606065)
chr1 (270-350)||(27810103-27810183)
chr1 (269-350)||(30196814-30196896)
chr1 (270-350)||(21441738-21441818)
chr1 (5-110)||(48941702-48941810)
chr1 (3-60)||(17449461-17449518)
chr1 (270-345)||(24136809-24136884)
chr1 (276-350)||(30505232-30505307)
chr1 (274-350)||(3826708-3826785)
chr1 (25-60)||(5924831-5924866)
chr1 (101-138)||(17309837-17309874)
chr1 (308-340)||(27563596-27563628)
[»] chr4 (21 HSPs)
chr4 (268-350)||(43358715-43358797)
chr4 (270-350)||(36812292-36812372)
chr4 (1-96)||(52518875-52518970)
chr4 (269-350)||(48743812-48743893)
chr4 (270-350)||(55596051-55596131)
chr4 (1-96)||(52520717-52520812)
chr4 (269-350)||(149174-149256)
chr4 (270-350)||(22920159-22920240)
chr4 (270-350)||(22971559-22971640)
chr4 (264-350)||(8719802-8719888)
chr4 (262-345)||(29406918-29407001)
chr4 (3-56)||(7040516-7040569)
chr4 (269-346)||(12241163-12241240)
chr4 (3-56)||(18656263-18656316)
chr4 (260-346)||(389536-389623)
chr4 (291-350)||(25539962-25540021)
chr4 (14-60)||(56074680-56074726)
chr4 (3-56)||(23564698-23564751)
chr4 (3-56)||(23566392-23566445)
chr4 (26-58)||(18395689-18395721)
chr4 (310-350)||(52593931-52593971)
[»] chr5 (5 HSPs)
chr5 (268-350)||(32873036-32873118)
chr5 (269-350)||(22647450-22647532)
chr5 (272-350)||(39032707-39032786)
chr5 (311-349)||(6046416-6046454)
chr5 (16-60)||(20012959-20013003)
[»] chr3 (8 HSPs)
chr3 (272-350)||(51650711-51650789)
chr3 (268-350)||(32008135-32008218)
chr3 (268-350)||(52678479-52678562)
chr3 (3-60)||(17402805-17402862)
chr3 (3-60)||(6789770-6789828)
chr3 (3-56)||(1140156-1140209)
chr3 (268-345)||(51032513-51032590)
chr3 (269-345)||(40159714-40159790)
[»] chr6 (8 HSPs)
chr6 (269-350)||(14095013-14095095)
chr6 (3-60)||(5377029-5377086)
chr6 (3-60)||(5378884-5378941)
chr6 (2-60)||(8915619-8915677)
chr6 (100-164)||(2161920-2161984)
chr6 (1-96)||(9415184-9415278)
chr6 (12-97)||(24544733-24544818)
chr6 (3-56)||(1088676-1088729)
[»] scaffold0286 (1 HSPs)
scaffold0286 (100-164)||(15122-15186)
[»] scaffold0189 (1 HSPs)
scaffold0189 (2-60)||(19096-19154)
[»] scaffold0057 (1 HSPs)
scaffold0057 (14-60)||(58936-58982)


Alignment Details
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 9431172 - 9431254
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
9431172 aagagtagtgatatttgtacacattttttaaacaatttttatgacaattttgtttttctctattttgattggtcaaaatcaat 9431254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 338
Target Start/End: Original strand, 31824961 - 31825029
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattg 338  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||    
31824961 gagtagtgatatttgtacaccttttctaaacaacttccatgacaactttgtttttctctattttgattg 31825029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 45081584 - 45081501
Alignment:
268 aagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||| | |||||| ||||||| || ||| |||||||||||||||||||||||||||||| |||||||||    
45081584 aagagtagtgatatttgtatatctttttctaaacaacttccataacaattttgtttttctctattttgattggtcaaaatcaat 45081501  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 1158223 - 1158304
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||||||| |||| || || |||||||| ||||||||| ||||||||||||| | |||||||||    
1158223 agagtagtgatatttgtacaccttttctaaataactttcatgacaactttgtttttttctattttgattgatcaaaatcaat 1158304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 7376704 - 7376625
Alignment:
271 agtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||| |||| ||||| ||||||| ||  ||||||||||| ||||||||||||||||||||| |||||||||    
7376704 agtagtgatatttatacatcttttctaaacaacttttatgacaattttatttttctctattttgattggtcaaaatcaat 7376625  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 11812020 - 11812070
Alignment:
129 gacctcaattatactaactagtgtgattaactaactaactagagtgagtaa 179  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||    
11812020 gacctcaattatactaaccagtgcgattaactaactaactagagtgagtaa 11812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 12659335 - 12659253
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||| ||| || |||| || ||||| || ||||||||||||||| ||||||||| |||||||||    
12659335 agagtagtgatatttgtacacctctttctatacaacttccatgataactttgtttttctctatgttgattggtcaaaatcaat 12659253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 12960122 - 12960040
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||| |||||||| |||||| ||||||| ||  ||||||| ||| ||||||||||||||||||| | |||||||||    
12960122 agagtagtgatctttgtacatctttttctaaacaacttctatgacaactttatttttctctattttgattgatcaaaatcaat 12960040  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 40608696 - 40608615
Alignment:
270 gagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||| ||||| | || ||| |||| |||||  ||||||||||||||||||| ||||||||||||| |||||||||    
40608696 gagtagtgatacttgtatatctctttctaaataatttttatgacaattttgtttttctttattttgattggtcaaaatcaat 40608615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 34299292 - 34299368
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaat 346  Q
    |||||||||||||||||||| |  ||| ||||||| ||  ||||||||||||||||| ||||||||||||||| |||||    
34299292 aagagtagtgatatttgtac-ctctttctaaacaacttctatgacaattttgttttt-tctattttgattggtcaaaat 34299368  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 40997843 - 40997761
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||| ||||||| ||||||| || ||| |||| |||||  |||| ||||||||||||||||||||| |||||| |||||||||    
40997843 agagcagtgatacttgtacatctctttctaaataatttctatgataattttgtttttctctattttaattggtcaaaatcaat 40997761  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 5567634 - 5567581
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
5567634 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 5567581  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 6428949 - 6428856
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||| |||| || || |||||||||| ||||||  |||||||||| ||| |  |||  |||| | ||||||||||||||||||||    
6428949 tcatagatgtaagtaagatagcaaacataagagtactcatgtgagagatactcaaagaaactcattgtagagtgaatagatttgattaaaagat 6428856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 30224438 - 30224385
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
30224438 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 30224385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 36535874 - 36535922
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagat 51  Q
    |||||||||||||||||| || ||||||||||||| |||||| ||||||    
36535874 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagat 36535922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 30608599 - 30608674
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    ||||||||||||||||||| || ||||  ||||  |  ||||||| ||||||||||| | ||||||||||||||||    
30608599 gagtagtgatatttgtacaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggtaaaaa 30608674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 3375457 - 3375511
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcat 57  Q
    ||||||||||||| |||| || ||||| ||||||| |||||| ||||||||||||    
3375457 tcatagatgtaagtaagatagcaagcaaaagagtactcatgtgggagatactcat 3375511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31032038 - 31032084
Alignment:
14 agcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||||    
31032038 agcaagaaagcaagcataagagtactcatgtgggagatactcataga 31032084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 38504313 - 38504272
Alignment:
309 tgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
38504313 tgacaattttgtttttctctcttttgattggtcaaaaacaat 38504272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 43587784 - 43587743
Alignment:
309 tgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
43587784 tgacaactttgtttttctctcttttgattggtaaaaagcaat 43587743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 350
Target Start/End: Original strand, 39744475 - 39744563
Alignment:
262 tattttaagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||| ||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||    
39744475 tattttatgagtagtgatatttgtacaccttttctaaacaactttcatgacaactttgtttttctctattttgattggtcaaaatcaat 39744563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 14797538 - 14797621
Alignment:
267 taagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||  |||||||||    
14797538 taagagtagtgatatttgtacaccttttttaaacaatttttatgacaactttgtttttttctattttgattggacaaaatcaat 14797621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 13465963 - 13466040
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaat 346  Q
    |||||||||||||||||| ||||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||    
13465963 agagtagtgatatttgtataccttttctaaacaacttccatgacaactttgtttttctctattttgattggtcaaaat 13466040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 3585811 - 3585728
Alignment:
268 aagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||| |||||| ||||||| ||  ||||||| ||||||||||||||||||||||| | |||||||||    
3585811 aagagtagtgatatttgtacatctttttctaaacaacttttatgacaactttgtttttctctattttgattgatcaaaatcaat 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 3961219 - 3961277
Alignment:
100 aaatgagtacatgtgtggtcttatttatagacctcaattatactaactagtgtgattaa 158  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||    
3961219 aaatgagtacatatatggtcttatttatagacctcaattatactaactaatgtgattaa 3961277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 39737576 - 39737657
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||||||| |||| |||||  |||| || ||||||||||| |||||| |||||| |||||||||    
39737576 agagtagtgatatttgtacaccttttctaaataatttttatgataactttgtttttctttattttaattggttaaaatcaat 39737657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 11742007 - 11741925
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||| |||| ||| ||||||  ||  ||||||| ||| ||||||||||||||||||||| |||||||||    
11742007 agagtagtgatatttgtatacctctttctaaacatcttctatgacaactttctttttctctattttgattggtcaaaatcaat 11741925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 43356502 - 43356424
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaat 346  Q
    ||||| |||||||||| ||||  |||| ||||||| || |||||||| ||||||||| ||||||||||||||| |||||    
43356502 aagagcagtgatatttatacatattttctaaacaactttcatgacaactttgtttttttctattttgattggtcaaaat 43356424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 41715350 - 41715391
Alignment:
309 tgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||||||||||||| |||||||||    
41715350 tgacaattttgtttttctctattttgattggtcaaaatcaat 41715391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 6746404 - 6746320
Alignment:
267 taagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||| || ||| | ||||| ||  ||||||| || |||||||| ||||||||||||| |||||||||    
6746404 taagagtagtgatatttgtacaactctttatgaacaacttcaatgacaacttggtttttctttattttgattggtcaaaatcaat 6746320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 29758328 - 29758275
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
29758328 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 29758275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 28124608 - 28124703
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||| |||| || | |||||||||||||||    
28124608 gatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaatgaaaatatttgattaaaagat 28124703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 28126435 - 28126530
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||| |||| || | |||||||||||||||    
28126435 gatcatagatgtaagcaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattggaatgaaaatatttgattaaaagat 28126530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 9055452 - 9055369
Alignment:
267 taagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||||||||| ||||||| || |||||||| || |||||||||||||||||||||| |||||||||    
9055452 taagagtagtgatatttgtacaccttttctaaacaacttccatgacaacttcgtttttctctattttgattggtcaaaatcaat 9055369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 2756806 - 2756888
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||| |||||||||||||||| |||| || || |||||||| ||||||||||||||||||||||||| |||||||||    
2756806 aagagtagtggtatttgtacaccttttctaaataacttccatgacaactttgtttttctctattttgattggtcaaaatcaat 2756888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 21037121 - 21037205
Alignment:
267 taagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||||||||||||||| ||| |||||||||    
21037121 taagagtagtgatatttgtacacctctttctaaacaacttccatgacaactttgtttttctctattttgatcggtcaaaatcaat 21037205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4895794 - 4895700
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||||||||||| || |||||||||| |||| | |||||||||||||||||| |||||| |||| |||| | |||||||||||||    
4895794 gatcatagatgtaagcaagagagcaaacataagagtactcatctgggagatactcatagagatccatattggaatgaatata-ttgattaaaagat 4895700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28014294 - 28014353
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||||| || ||||||||||||  |||||| |||||||||||||||    
28014294 gatcatagatgtaagcaagatagcaagcataagagtgctcatgtgggagatactcataga 28014353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 20046518 - 20046575
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||| ||| || ||||||||||||| |||||| |||||||||||||||    
20046518 tcatagatgtaagcgagatagcaagcataagagtactcatgtgggagatactcataga 20046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 3458871 - 3458824
Alignment:
101 aatgagtacatgtgtggtcttatttatagacctcaattatactaacta 148  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||||||    
3458871 aatgagtacatgtatggtcttatttatagacctcaatcacactaacta 3458824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 44963371 - 44963318
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    ||||||||||||| |||| || |||||||||||||||||||  |||||||||||    
44963371 tcatagatgtaagtaagatagcaagcataagagtattcatgagggagatactca 44963318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 21153235 - 21153159
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    ||||||||||||| |||||| ||||||   |||| || |||||||| |||| |||||||| ||||||||||| ||||    
21153235 agagtagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtcaaaa 21153159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25471792 - 25471851
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    ||||||||||||||| |||| || |||||||||| |||||| || ||||||||| |||||    
25471792 gatcatagatgtaagaaagatagcaagcataagattattcacgtgggagatactaataga 25471851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 29598018 - 29598081
Alignment:
26 agcataagagtattcatgtaggagatactcatagagatacatattagaat-aaatagatttgat 88  Q
    ||||||||||||||||||| |||||||| ||||||||  |||| |||||| || ||||||||||    
29598018 agcataagagtattcatgtgggagatacccatagagactcatagtagaatgaactagatttgat 29598081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 41966511 - 41966430
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||| ||| || |||||||||||||  ||||||| ||  ||||||||  |||| |||||| |||| ||||    
41966511 agagtagtgatatttgaacaactattttaaacaatttttatgacaacttcttttttctcagtttttattggtcaaaaacaat 41966430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16808599 - 16808694
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||| |||| || | |||||||||||||||    
16808599 gatcatagatgtaagcaagagagcaagcataagagtactcatgtcggagatactcatagagatccatattggaatgaaaatatttgattaaaagat 16808694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 3605982 - 3606065
Alignment:
268 aagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||| || ||||||||||||||||||||||||| |||||||||    
3605982 aagagtagtgatatttgtacatctttttctaaacaatttccatgataactttgtttttctctattttgattggtcaaaatcaat 3606065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 27810103 - 27810183
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||| |||||||||||||||| ||||||| || |||||||| ||||| ||||||||||||||||||| |||||||||    
27810103 gagtagtggtatttgtacaccttttctaaacaacttccatgacaactttgtatttctctattttgattggtcaaaatcaat 27810183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 30196896 - 30196814
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||    
30196896 agagtagtgatatttgtacacctctttctaaacaactttcatgacaactttatttttctctattttgattggtcaaaatcaat 30196814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 21441818 - 21441738
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||| ||||||||||||||||||| ||||||| || |||||||| ||||||||| ||||||||||||| | |||||||||    
21441818 gagtaatgatatttgtacaccttttctaaacaacttccatgacaactttgtttttttctattttgattgatcaaaatcaat 21441738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 48941810 - 48941702
Alignment:
5 atagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagataca-tat-tag-aataaatagatttgattaaaagatacaaa 101  Q
    ||||||||||||||||||| ||| ||||||||||||||||  |||||||||||| | |  || ||| ||| ||| ||||||||||||||||||||||  |    
48941810 atagatgtaagcaagagagcaagtataagagtattcatgtgagagatactcatataaactcattatatagaaatgaatagatttgattaaaagatactga 48941711  T
102 atgagtaca 110  Q
    |||||||||    
48941710 atgagtaca 48941702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17449518 - 17449461
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||||    
17449518 tcatagatgtaagcaagatagcaagcaaaagagtactcatgtgggagatactcataga 17449461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 24136809 - 24136884
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    |||||||||||||| |||| ||||||   |||||||  ||||||| |||||||||||||  |||||||||||||||    
24136809 gagtagtgatatttatacaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggtaaaaa 24136884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 30505232 - 30505307
Alignment:
276 tgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||| || |||||| |||| |||||  ||||||| ||||||||||| ||||||||||||| |||||||||    
30505232 tgatatttgtccatctttttctaaataatttttatgacaactttgtttttctttattttgattggtcaaaatcaat 30505307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 3826708 - 3826785
Alignment:
274 agtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||| |||||| | ||||| ||  ||||||| ||| ||||||| ||||||||||||| |||||||||    
3826708 agtgatatttgtacaactttttatgaacaacttcaatgacaactttatttttctttattttgattggtcaaaatcaat 3826785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 5924831 - 5924866
Alignment:
25 aagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||| |||||||||||||||||    
5924831 aagcataagagtattcatataggagatactcataga 5924866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 17309837 - 17309874
Alignment:
101 aatgagtacatgtgtggtcttatttatagacctcaatt 138  Q
    ||||||||||||  ||||||||||||||||||||||||    
17309837 aatgagtacatggatggtcttatttatagacctcaatt 17309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 27563628 - 27563596
Alignment:
308 atgacaattttgtttttctctattttgattggt 340  Q
    ||||||||||||||||||||| |||||||||||    
27563628 atgacaattttgtttttctctcttttgattggt 27563596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 43358797 - 43358715
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||||| |||||||||    
43358797 aagagtagtgatatttgtacatcttttttaaacaatttttatgacaactttgtttttctctattttgattggtcaaaatcaat 43358715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 36812292 - 36812372
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||    
36812292 gagtagtgatatttgtacaccttttctaaacaacttccatgacaactttgtttttctctattttgattggtcaaaatcaat 36812372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 52518970 - 52518875
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||||||| |||||| |||| || | |||||||||||||||    
52518970 gatcatagatgtaagcaagagagcaagcataagagaactcatgtgggagatactcatagagatccatattggaatgaaaatatttgattaaaagat 52518875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 48743893 - 48743812
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||| ||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||    
48743893 agagtagtgatatttgtacagcttttctaaacaacttccatgacaactttgtttttctctattttgattggtcaaaatcaat 48743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 55596131 - 55596051
Alignment:
270 gagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| || |||||||||||||||||||||| |||||||||    
55596131 gagtagtgatatttgtacaccttttctaaacaactttcatgacaacttcgtttttctctattttgattggtcaaaatcaat 55596051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 52520812 - 52520717
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||  ||| || | |||||||||||||||    
52520812 gatcatagatgtaagaaagagagcaagcataagagtactcatgtgggagatactcatagagatccatattgaaatgaaaatatttgattaaaagat 52520717  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 149174 - 149256
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||| ||| ||||||| || |||||||| ||||||||||||||||||||||||  |||||||||    
149174 agagtagtgatatttgtacacctctttctaaacaacttccatgacaactttgtttttctctattttgattgggcaaaatcaat 149256  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 22920159 - 22920240
Alignment:
270 gagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||| |||||| ||||||| ||  ||||||| ||||||||||||||||||||||||| |||||||||    
22920159 gagtagtgatatttgtacatctttttctaaacaacttttatgacaactttgtttttctctattttgattggtcaaaatcaat 22920240  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 22971640 - 22971559
Alignment:
270 gagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||| |||||| ||||||| ||  ||||||| ||||||||||||||||||||||||| |||||||||    
22971640 gagtagtgatatttgtacatctttttctaaacaacttttatgacaactttgtttttctctattttgattggtcaaaatcaat 22971559  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 8719802 - 8719888
Alignment:
264 ttttaagagtagtgatatttgtacacct-tttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||| |||| || ||||||||||| ||  ||||||| |||||||| |||||||||||||||| |||||||||    
8719802 ttttaagagtagtgatatttatacatctctttttaaacaacttctatgacaactttgtttt-ctctattttgattggtcaaaatcaat 8719888  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 345
Target Start/End: Original strand, 29406918 - 29407001
Alignment:
262 tattttaagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    ||||| |||||||||||||| |||||| || |||   |||| || ||||||||||||| |||||||||||||||||||||||||    
29406918 tatttaaagagtagtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggtaaaaa 29407001  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 7040569 - 7040516
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
7040569 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 7040516  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 12241240 - 12241163
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaat 346  Q
    |||||||||||||||||||| || ||||  ||||  |  ||||||| ||| ||||||||| |||||||||||||||||    
12241240 agagtagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgattggtaaaaat 12241163  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 18656316 - 18656263
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
18656316 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 18656263  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 389536 - 389623
Alignment:
260 attattttaagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaat 346  Q
    ||||||| ||||||| |||||||||||||  ||||| | ||||| |    |||||| ||||||||||||||||||||||||| |||||    
389536 attatttgaagagtaatgatatttgtacaattttttgtgaacaactgctttgacaactttgtttttctctattttgattggtcaaaat 389623  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 25540021 - 25539962
Alignment:
291 ttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||| ||||||| ||  ||||||| ||||||||| ||||||||||||||| |||||||||    
25540021 ttttctaaacaacttttatgacaactttgtttttttctattttgattggtcaaaatcaat 25539962  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 56074680 - 56074726
Alignment:
14 agcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||||    
56074680 agcaagaaagcaagcataagagtactcatgtgggagatactcataga 56074726  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 23564698 - 23564751
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||| | || ||||||||||||| |||||  |||||||||||    
23564698 tcatagatgtaagcaaaatagcaagcataagagtactcatgagggagatactca 23564751  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 23566392 - 23566445
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || |||||||||||||  ||||  |||||||||||    
23566392 tcatagatgtaagcaagatagcaagcataagagtacccatgagggagatactca 23566445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 18395689 - 18395721
Alignment:
26 agcataagagtattcatgtaggagatactcata 58  Q
    ||||||||||||||||||| |||||||||||||    
18395689 agcataagagtattcatgtgggagatactcata 18395721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 52593971 - 52593931
Alignment:
310 gacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||| ||||||| ||||||||||||| |||||||||    
52593971 gacaattttatttttctatattttgattggtcaaaatcaat 52593931  T

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Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 32873036 - 32873118
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||| |||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||    
32873036 aagagtagtggtatttgtacaccttttctaaacaacttccatgacaactttgtttttctctattttgattggtcaaaatcaat 32873118  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 350
Target Start/End: Original strand, 22647450 - 22647532
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||| |||||||||| |||| |||||| ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||    
22647450 agagcagtgatatttatacatctttttctaaacaacttccatgacaactttgtttttctctattttgattggtcaaaatcaat 22647532  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 39032707 - 39032786
Alignment:
272 gtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||| ||| ||||||| ||  ||||||| ||||||||||| |||||||||| || |||||||||    
39032707 gtagtgatatttgtacacctctttctaaacaacttttatgacaactttgtttttctttattttgatttgtcaaaatcaat 39032786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 6046454 - 6046416
Alignment:
311 acaattttgtttttctctattttgattggtaaaaatcaa 349  Q
    |||| ||||||||||||||||||||||||| ||||||||    
6046454 acaactttgtttttctctattttgattggtcaaaatcaa 6046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 20012959 - 20013003
Alignment:
16 caagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    ||||| || ||||||||||||| |||||| |||||||||||||||    
20012959 caagaaagcaagcataagagtactcatgtgggagatactcataga 20013003  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 51650789 - 51650711
Alignment:
272 gtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||||| |||| || || |||||||| ||||||||||||||||||||||||  |||||||||    
51650789 gtagtgatatttgtacaccttttctaaataacttccatgacaactttgtttttctctattttgattggccaaaatcaat 51650711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 350
Target Start/End: Complemental strand, 32008218 - 32008135
Alignment:
268 aagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||||  ||||| ||||||| || |||||||| |||||||||||||||||| |||||| |||||||||    
32008218 aagagtagtgatatttgtacatatttttctaaacaacttccatgacaactttgtttttctctattttaattggtcaaaatcaat 32008135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 350
Target Start/End: Original strand, 52678479 - 52678562
Alignment:
268 aagagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    ||||||||||||||||||||| || ||| ||||||| || ||||| || ||||||||||||||||||||||||| |||||||||    
52678479 aagagtagtgatatttgtacatctctttctaaacaactttcatgataactttgtttttctctattttgattggttaaaatcaat 52678562  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 17402805 - 17402862
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||    
17402805 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 17402862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 6789828 - 6789770
Alignment:
3 tcatagatgtaagcaa-gagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||| || || ||||||||||||| |||||| |||||||||||||||    
6789828 tcatagatgtaagcaaagatagcaagcataagagtactcatgtgggagatactcataga 6789770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 1140209 - 1140156
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || ||||||||||||| |||||  |||||||||||    
1140209 tcatagatgtaagcaagatagcaagcataagagtactcatgagggagatactca 1140156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 51032513 - 51032590
Alignment:
268 aagagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    |||||||||||||| |||||| |||||||| |||| || |||||||| |||  |||||| | ||||||||||| ||||    
51032513 aagagtagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtcaaaa 51032590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 345
Target Start/End: Original strand, 40159714 - 40159790
Alignment:
269 agagtagtgatatttgtacaccttttttaaacaatttacatgacaattttgtttttctctattttgattggtaaaaa 345  Q
    ||||||||||||| |||||| || |||   |||| || |||||||| |||| |||||||| ||||||||||| ||||    
40159714 agagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaa 40159790  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 14095095 - 14095013
Alignment:
269 agagtagtgatatttgtacaccttttt-taaacaatttacatgacaattttgtttttctctattttgattggtaaaaatcaat 350  Q
    |||||||||||||||||||| || ||| ||||||| || |||||||| ||||||||||||||||||||||| | |||||||||    
14095095 agagtagtgatatttgtacatctctttctaaacaacttccatgacaactttgtttttctctattttgattgatcaaaatcaat 14095013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 5377086 - 5377029
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||    
5377086 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 5377029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 5378941 - 5378884
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||| || ||||||||||||| |||||| |||||||||||||||    
5378941 tcatagatgtaagcaagatagcaagcataagagtactcatgtgggagatactcataga 5378884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 8915677 - 8915619
Alignment:
2 atcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    |||||||||||||||||||||| ||||||||||||| || ||| | |||||||||||||    
8915677 atcatagatgtaagcaagagagcaagcataagagtactcgtgtggaagatactcataga 8915619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 2161920 - 2161984
Alignment:
100 aaatgagtacatgtgtggtcttatttatagacctcaattatactaactagtgtgattaactaact 164  Q
    ||||||||| ||||  ||||||||||||| |||||| |||||||||||| |||| ||||||||||    
2161920 aaatgagtagatgtagggtcttatttataaacctcagttatactaactaatgtggttaactaact 2161984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9415278 - 9415184
Alignment:
1 gatcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaatagatttgattaaaagat 96  Q
    ||||||| |||||| ||| |||  || |||||||||| |||||| ||||||||||||||| |  |||  ||||||  |||||||||||||||||||    
9415278 gatcataaatgtaaacaaaagaacaaacataagagtactcatgtgggagatactcatagaaactcattgtagaat-gatagatttgattaaaagat 9415184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 24544818 - 24544733
Alignment:
12 taagcaagagagtaagcataagagtattcatgtaggagatactcatagagatacatattagaataaa-tagatttgattaaaagata 97  Q
    ||||||||| || ||||||||||||| |||||  ||||||||||||||| |  |||| |||| |||| ||||||||| |||||||||    
24544818 taagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagtagagtaaactagatttga-taaaagata 24544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1088676 - 1088729
Alignment:
3 tcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactca 56  Q
    |||||||||||||||||| || || |||||||||| |||| | |||||||||||    
1088676 tcatagatgtaagcaagatagcaaacataagagtactcatatgggagatactca 1088729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 15186 - 15122
Alignment:
100 aaatgagtacatgtgtggtcttatttatagacctcaattatactaactagtgtgattaactaact 164  Q
    ||||||||| ||||  ||||||||||||| |||||| |||||||||||| |||| ||||||||||    
15186 aaatgagtagatgtagggtcttatttataaacctcagttatactaactaatgtggttaactaact 15122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 19154 - 19096
Alignment:
2 atcatagatgtaagcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
    ||||||||||||||||||| || ||||||| ||||| |||||| |||||| ||||||||    
19154 atcatagatgtaagcaagatagaaagcataggagtactcatgtgggagatgctcataga 19096  T

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Target: scaffold0057 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 58982 - 58936
Alignment:
14 agcaagagagtaagcataagagtattcatgtaggagatactcataga 60  Q
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58982 agcaagaaagcaagcataagagtactcatgtgggagatactcataga 58936  T

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