View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_16 (Length: 401)
Name: NF17883_low_16
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 35694460 - 35694091
Alignment:
| Q |
16 |
atagtcttgtactgctagtttcaaaagggtaatgaaggaaatggagttacaacaaaatggtttcattcaaagtgaaaatgaaaatagagagttgataatt |
115 |
Q |
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| T |
35694460 |
atagtcttgtactgctagtttcaaaagggtaatgaaggaaatggagttacaacaaaatggtttcattcaaagtgaaaatgaaaatagagagttgataatt |
35694361 |
T |
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| Q |
116 |
cacatggaaaacatgttacaaagtgttgaacttcccttagtttcacgttgttgtatatacaaagtacctcaaaaaatccgaaaactcaaccaagaagcct |
215 |
Q |
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| T |
35694360 |
cacatggaaaacatgttacaaagtgttgaacttcccttagtttcacgttgttgtatatacaaagtacctcaaaaaatccgaaaactcaaccaagaagcct |
35694261 |
T |
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| Q |
216 |
atactccaaccattgtttccattggtccatttcacaatggagacaagaggttagaatcaatggaagatctcaaattgaggtacctcaagagttttttctt |
315 |
Q |
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| T |
35694260 |
atactccaaccattgtttccattggtccatttcacaatggagacaagaggttagaatcaatggaagatctcaaattgaggtacctcaagagttttttctt |
35694161 |
T |
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| Q |
316 |
agaaaggactcataaggggttaggagattgcattggttacatcaaaaaatcggaagaaatcattagatct |
385 |
Q |
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| T |
35694160 |
agaaaggactcataaggggttaggagattgcattggttacatcaaaaaatctgaagaaatcattagatct |
35694091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 35690054 - 35690091
Alignment:
| Q |
348 |
ttggttacatcaaaaaatcggaagaaatcattagatct |
385 |
Q |
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| T |
35690054 |
ttggttacatcagaaaatcagaagaaatcattagatct |
35690091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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