View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_17 (Length: 399)
Name: NF17883_low_17
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 50651419 - 50651615
Alignment:
| Q |
1 |
tctaacaaagcctttgcttctcccattcggactgacatcaaaggttccaaccatagagtgttcactccgacaaacaaatcatctcgtccctaatacatat |
100 |
Q |
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| T |
50651419 |
tctaacaaagcttttgcttctcccattcggactgacatcaaaggttccagccatagagtgttcactccgacaaacaaatcatctcgtccctaatacatat |
50651518 |
T |
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| Q |
101 |
tccaataccaactcattatgatgagag-agaaaaatgctggtagtacgacaccattgaatcaaactgctttgcttgagctgctacccttgggatcac |
196 |
Q |
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| T |
50651519 |
tccaataccaactcattatgatgagagaaaaaaaatgctggtaggacgacaccattgaatcaaactgctttgcttgagctgctacccttgggatcac |
50651615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 50651615 - 50651765
Alignment:
| Q |
236 |
cgctcgacctctacaaaccacatcagctgaactttcgactttattttcccaaattgtcaggttcctactcttccacaagctccacatcgtgacagaaaat |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50651615 |
cgctcgacctctacaaaccacatcagctgaactttcgactttattttcccaaattgtcaggttcctactcttccacaagctccacatcgtgacagcaaat |
50651714 |
T |
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| Q |
336 |
atgccacggcagttgctccaaaacttgaaacacacttcctaaagcacaggt |
386 |
Q |
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| T |
50651715 |
atgccacggcagttgctccaaaacttgaaacacacttcctaaaccacaggt |
50651765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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