View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_19 (Length: 376)
Name: NF17883_low_19
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 44 - 360
Target Start/End: Original strand, 43109912 - 43110228
Alignment:
| Q |
44 |
tgtgtttgatttgtaagaaaacgaagtattagacgagacaaatatatttgtccaatgtttgatttaaaaaagcaattaacaaaggacaacacataataaa |
143 |
Q |
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| T |
43109912 |
tgtgtttgatttgtaagaaaatgaagtattggacgggacaaaaatatttgtccaatgtttgatttgaaaaagcaattaataaaggacaacacagaataaa |
43110011 |
T |
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| Q |
144 |
acgtgatgcactagacaactttcccnnnnnnngttaaaattgaattcaaaataaaattgaaaagtatttgaacannnnnnncacaataaagttatatcgt |
243 |
Q |
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| T |
43110012 |
aagctatgcactagacaacttcccctttttttgttaaaattgaaatcaaaataaaattgaaaagtatttgaacatttttttcacaataaagttatatcgt |
43110111 |
T |
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| Q |
244 |
ttcattcatcaaatgggaaaaatacaattaatttcaaaattatctttattgggaaattatgtattcaattaatttctctcctcacattagattagataga |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43110112 |
ttcattcatcaaatgggaaaaatacaattaatttcaaaattatctttatagggaaattatgtattcaattaatttctctcctcacattagattagataga |
43110211 |
T |
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| Q |
344 |
tatacacaccttgcaca |
360 |
Q |
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||||||||||||||||| |
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| T |
43110212 |
tatacacaccttgcaca |
43110228 |
T |
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