View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_2 (Length: 803)
Name: NF17883_low_2
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 459 - 797
Target Start/End: Original strand, 42032426 - 42032773
Alignment:
| Q |
459 |
ggtagaccaaagtgaaatcaaataaatagttaagagactaaaacactaatgtattcgaa----------agaccttacaaacattttgaacaaaataaat |
548 |
Q |
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| T |
42032426 |
ggtagagcaaagtgaaatcaaataaatagttaagagattaaaacactaatgtattcgaagatccaaaaaagaccttacaaacattttgaacaaaataaat |
42032525 |
T |
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| Q |
549 |
tgtgtttttatttctacaaaaaagacaatgtttgatgnnnnnnnaagaagtcaaactagcctactaaaattggcaccggtgagaatcgaaaagagaacac |
648 |
Q |
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| T |
42032526 |
tgtgtttttatttctacaaaaaagacaatgtttgatgtttttttaagaagtcaaactagcctactaaaattggcaccggtgagaatcgaaaagagaacac |
42032625 |
T |
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| Q |
649 |
tcaaatatcgcaaaccaacaacaccagaccaacacaaatgggttcataatgtttggatgttatttaatgatgttaaaagagattatggtcgacggggtgt |
748 |
Q |
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| T |
42032626 |
tcaaatatcg-aaaccaacaacaccagaccaacacaaatgggttcataatgtttggatgttatttaacgatgttaaaagagattatggtcgacggggtgt |
42032724 |
T |
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| Q |
749 |
tatatggaattcatttggtggaggagctgggtgtatgtagtgatgatgt |
797 |
Q |
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| T |
42032725 |
tatatggaattcatttggtggaggagctgagtgtatgtagtgatgatgt |
42032773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 42031760 - 42031875
Alignment:
| Q |
71 |
tacggaagaagcaacaactcaccaacaatgcaaacaaatccgacgggagtatcattgtcaccccacgctacgcaaatatatgataccacatttggctagc |
170 |
Q |
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| T |
42031760 |
tacggaagaagcaacaactcaccaacaatgcaaacaaatccgacgggagtatcattgtcaccccacgctacgcaaatatatgataccacatttggctatc |
42031859 |
T |
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| Q |
171 |
gagcaatctgaatctc |
186 |
Q |
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| T |
42031860 |
gagcaatctgaatctc |
42031875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 42031873 - 42031946
Alignment:
| Q |
219 |
ctcattcggtaactgtcattccccttgtagccaagttctctcgacaagtgatggcgtaacatttgccatcaaaa |
292 |
Q |
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| T |
42031873 |
ctcattcggtaactgtcattccccttgtagccaagttctctcgacaagtgatggcgtaacatttgccatcaaaa |
42031946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 42032298 - 42032363
Alignment:
| Q |
331 |
aaggggatgaagaaaagaggaggaaaatggttggttataagatatagtaatatgcaagatccaatg |
396 |
Q |
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| T |
42032298 |
aaggggatgaagaaaagaggaggaaaatggttggttataagatatagtaatatgcaagatccaatg |
42032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 42031697 - 42031730
Alignment:
| Q |
40 |
ccttccataatgaccacaccattgtgtgccatac |
73 |
Q |
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| T |
42031697 |
ccttccataatgaccacaccattgtgtgccatac |
42031730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 44745944 - 44745989
Alignment:
| Q |
593 |
aagaagtcaaactagcctactaaaattggcaccggtgagaatcgaa |
638 |
Q |
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| T |
44745944 |
aagaagccaaactagcctaccaaaattggcactggggagaatcgaa |
44745989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 6127949 - 6127994
Alignment:
| Q |
593 |
aagaagtcaaactagcctactaaaattggcaccggtgagaatcgaa |
638 |
Q |
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| T |
6127949 |
aagaagccaaactagcccaccaaaattggcaccggggagaatcgaa |
6127994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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