View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17883_low_20 (Length: 366)
Name: NF17883_low_20
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 17075751 - 17075396
Alignment:
| Q |
1 |
tcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgagg |
100 |
Q |
| |
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||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||| | |
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| T |
17075751 |
tcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaag |
17075652 |
T |
|
| Q |
101 |
aaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaa |
200 |
Q |
| |
|
||||||| |||||||||||||||| || ||||| ||||||||||||||| ||||||||||||| || |||||||| | |||||||||||| ||||||| |
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|
| T |
17075651 |
aaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcag |
17075552 |
T |
|
| Q |
201 |
ccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacacc |
300 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||| || || ||||||||||||| ||| |||||||||| ||||| || |||| | |||| |||| |
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| T |
17075551 |
ccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcacc |
17075452 |
T |
|
| Q |
301 |
actttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
17075451 |
actttcttaaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg |
17075396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 124 - 356
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
| Q |
124 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccaccttcttcaaactaa |
223 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||| |
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| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
|
| Q |
224 |
tcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacaccactttcttaaccttcttccttgc |
323 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| || || | | || || || ||| |||||| ||||||||||||||||||||| ||||| |
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|
| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgcacagataccggattgggcaataggccgcaccactttcttaaccttctttcttgc |
11053503 |
T |
|
| Q |
324 |
cgaagaaataacaccagcgtcaccatgatgatg |
356 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
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|
| T |
11053502 |
cgatgaaataacaccagcgtcaccatgatgatg |
11053470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11064163 - 11064036
Alignment:
| Q |
1 |
tcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgagg |
100 |
Q |
| |
|
||||||| ||| || ||||||||| ||||||| ||||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||| |||||| |
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|
| T |
11064163 |
tcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgagg |
11064064 |
T |
|
| Q |
101 |
aaaccacccttaccgcctttttaagacg |
128 |
Q |
| |
|
|||||||| | ||| ||||||||||||| |
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|
| T |
11064063 |
aaaccaccttaaccacctttttaagacg |
11064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 17683923 - 17684263
Alignment:
| Q |
16 |
ttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgaggaaaccacccttaccg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
17683923 |
ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca |
17684022 |
T |
|
| Q |
116 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccaccttctt |
215 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||| || |
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|
| T |
17684023 |
cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt |
17684122 |
T |
|
| Q |
216 |
caaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttg-cactaggccacaccactttcttaacctt |
314 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| || || | | | | || || | | |||||| |||||||||| | ||||| |
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|
| T |
17684123 |
caaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgc-acaaatatcggattggaaaataggccgcaccactttcctgacctt |
17684221 |
T |
|
| Q |
315 |
cttccttgccgaagaaataacaccagcgtcaccatgatgatg |
356 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17684222 |
ctttcttgccgatgaaataacaccagcgtcaccatgatgatg |
17684263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 36159902 - 36160245
Alignment:
| Q |
13 |
accttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgaggaaaccaccctta |
112 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | || || ||||| ||| ||| ||||||| || ||||| | | |
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|
| T |
36159902 |
accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca |
36160001 |
T |
|
| Q |
113 |
ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaaccgcgccacctt |
212 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| | ||||||||||| ||| || ||||| || || | ||| || | || |||| ||||| || |
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|
| T |
36160002 |
ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaactgttgatcaatcattggtcggtaaccttgccacttt |
36160101 |
T |
|
| Q |
213 |
cttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacaccactttcttaacc |
312 |
Q |
| |
|
||||||||| ||||||| || |||||||| |||| ||||||||| | || ||||| | | | | || | || | |||| ||||||||| |||| | |
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|
| T |
36160102 |
tttcaaactattcaccgaatgtcgcaagataccatccactttctttcgtttcttaacattagtgcaagattgtacaattggcctcaccacttttttaagc |
36160201 |
T |
|
| Q |
313 |
ttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
356 |
Q |
| |
|
|| ||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
36160202 |
tttttcctggacgacgaaataacaccagcatcaccatgatgatg |
36160245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 26741538 - 26741893
Alignment:
| Q |
1 |
tcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgagg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||| | |
|
|
| T |
26741538 |
tcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaag |
26741637 |
T |
|
| Q |
101 |
aaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaa |
200 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| | |||| |
|
|
| T |
26741638 |
aaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcag |
26741737 |
T |
|
| Q |
201 |
ccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgggttttgcactaggccacacc |
300 |
Q |
| |
|
||| ||||||| |||||||||||||||| || ||| |||||| ||||||||||||||| ||| ||||| | || || | || ||| ||||| | || |
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|
| T |
26741738 |
ccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgcc |
26741837 |
T |
|
| Q |
301 |
actttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatg |
356 |
Q |
| |
|
||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
26741838 |
actctcttaaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg |
26741893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 10560001 - 10559722
Alignment:
| Q |
1 |
tcatcaatcacaaccttctcattcccatgcacagccacccaattaacccaatcattgttaactgaccccgacgaggaactaccatccgaaactcccgagg |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| ||||||| | |
|
|
| T |
10560001 |
tcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaag |
10559902 |
T |
|
| Q |
101 |
aaaccacccttaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatatgtaaaacggtggaacgatctttactaggcaa |
200 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
10559901 |
aaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcag |
10559802 |
T |
|
| Q |
201 |
ccgcgccaccttcttcaaactaatcaccgagtgccgcaagatcccattcactttcttcctcttattaacgatggaactgg |
280 |
Q |
| |
|
| || ||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
10559801 |
ctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctcttgttaacaatggtactgg |
10559722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 285 - 357
Target Start/End: Complemental strand, 10558491 - 10558419
Alignment:
| Q |
285 |
tgcactaggccacaccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccatgatgatgt |
357 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10558491 |
tgcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt |
10558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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