View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_low_22 (Length: 338)

Name: NF17883_low_22
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_low_22
NF17883_low_22
[»] chr5 (4 HSPs)
chr5 (19-324)||(27235563-27235866)
chr5 (126-324)||(27212086-27212286)
chr5 (17-85)||(27212326-27212394)
chr5 (126-157)||(24093754-24093785)
[»] chr8 (2 HSPs)
chr8 (126-211)||(12071656-12071741)
chr8 (15-85)||(12071539-12071609)
[»] chr7 (3 HSPs)
chr7 (19-85)||(13094097-13094163)
chr7 (23-73)||(42323871-42323921)
chr7 (126-155)||(40760328-40760357)
[»] chr6 (2 HSPs)
chr6 (126-156)||(4254042-4254072)
chr6 (128-157)||(4289040-4289069)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 27235866 - 27235563
Alignment:
Q  19 cagattcctgagaggtcgtttggttgaaagataaatacttcagtctcgtgaaactcagttcgagact-ggcattatgatttcgaagtagactaaatatgt 117  Q
    |||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  27235866 cagattcctgagaggtcacttggttgaaagataaatacttcaacctcgtgaaactcagttcgagactcggcattatgatttcgaagtagattaaatatgt 27235767  T
Q  118 gnnnnnnntatgaggtatttcaaaatacctctctttttatcatttttattcaatgttttcggatattcatttcgaaacaatagcattggggaataaccgt 217  Q
    |       |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  27235766 gaaaaaa-tatgaggtatt--aaaatacctctctttttatcatttttatttaatgttttcggatattcatttcgaaacaatagcatcggggaataactgt 27235670  T
Q  218 tttttggaagctaacaaatttgaacagcaatagcttcataagtagaaacaaaaacattggacccatagtcataggtggtcgaaacctatcaaaactaacc 317  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27235669 tttttggaagctaacaaatttgaagagcaatagcttcatcagtagaaacaaaaacattggacccgtagtcataggtggtcgaaacctatcaaaactaacc 27235570  T
Q  318 acatttt 324  Q
    |||||||    
T  27235569 acatttt 27235563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 126 - 324
Target Start/End: Complemental strand, 27212286 - 27212086
Alignment:
Q  126 tatgaggtatttcaaaatacctctctttttatcatttttattcaatgttttcggatattcatttcgaaacaatagcattggggaat---aaccgtttttt 222  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||  ||||||||||||| ||||| | ||  ||||   ||| |||||||    
T  27212286 tatgaggtatttcaaaatacctttctttttatcatttttattcaatcttttcggtaattcatttcgaaataatagaactgatgaatcagaactgtttttt 27212187  T
Q  223 ggaagctaacaaatttgaacagcaatagcttcataagtagaaacaaaaacattggacccatagtcataggtggtcgaaacctatcaaaactaaccacatt 322  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||| ||||    
T  27212186 ggaagctaacaa-tttgaacagcaatagcttcatcagtagaaacaaaaacattggacccataaccataagtggtcgaaacctatcaagactaacctcatt 27212088  T
Q  323 tt 324  Q
    ||    
T  27212087 tt 27212086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 27212394 - 27212326
Alignment:
Q  17 gccagattcctgagaggtcgtttggttgaaagataaatacttcagtctcgtgaaactcagttcgagact 85  Q
    ||||||||||||||| |||  ||||||||| |||||||||||||   | | ||||||||||||||||||    
T  27212394 gccagattcctgagaagtcacttggttgaatgataaatacttcaactttgagaaactcagttcgagact 27212326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 24093785 - 24093754
Alignment:
Q  126 tatgaggtatttcaaaatacctctctttttat 157  Q
    ||||||||||||||||||||||||||||||||    
T  24093785 tatgaggtatttcaaaatacctctctttttat 24093754  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 12071656 - 12071741
Alignment:
Q  126 tatgaggtatttcaaaatacctctctttttatcatttttattcaatgttttcggatattcatttcgaaacaatagcattggggaat 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||| ||||    
T  12071656 tatgaggtatttcaaaatacctctctttttatcacttttattcaatctttttggatattcatttcgaaacaatagcgttggtgaat 12071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 12071539 - 12071609
Alignment:
Q  15 ctgccagattcctgagaggtcgtttggttgaaagataaatacttcagtctcgtgaaactcagttcgagact 85  Q
    |||||||||||||||||||||  ||||||||||||||||||||| |  || | ||||||||||||||||||    
T  12071539 ctgccagattcctgagaggtcacttggttgaaagataaatactttaaccttgagaaactcagttcgagact 12071609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 13094097 - 13094163
Alignment:
Q  19 cagattcctgagaggtcgtttggttgaaagataaatacttcagtctcgtgaaactcagttcgagact 85  Q
    ||||||||||||||||| ||||||||||||||||||| || |  || | ||||||||||||||||||    
T  13094097 cagattcctgagaggtcatttggttgaaagataaatattttaaccttgagaaactcagttcgagact 13094163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 42323921 - 42323871
Alignment:
Q  23 ttcctgagaggtcgtttggttgaaagataaatacttcagtctcgtgaaact 73  Q
    |||||||||||||  ||||||||||||||| |||||||  |||||||||||    
T  42323921 ttcctgagaggtcccttggttgaaagataattacttcaaactcgtgaaact 42323871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 40760357 - 40760328
Alignment:
Q  126 tatgaggtatttcaaaatacctctcttttt 155  Q
    ||||||||||||||||||||||||||||||    
T  40760357 tatgaggtatttcaaaatacctctcttttt 40760328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 4254042 - 4254072
Alignment:
Q  126 tatgaggtatttcaaaatacctctcttttta 156  Q
    |||||||||||||||||||||||||||||||    
T  4254042 tatgaggtatttcaaaatacctctcttttta 4254072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Original strand, 4289040 - 4289069
Alignment:
Q  128 tgaggtatttcaaaatacctctctttttat 157  Q
    ||||||||||||||||||||||||||||||    
T  4289040 tgaggtatttcaaaatacctctctttttat 4289069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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