View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_27 (Length: 313)
Name: NF17883_low_27
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 41557845 - 41558136
Alignment:
| Q |
7 |
atcatcatttttgtttaatttctatgttctttacagcttctgtggctccgatttgccggttggaaaggaggttctaacactttgcaaggaaacccatgtt |
106 |
Q |
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| T |
41557845 |
atcatcatttttgtttaatttctatgttcttcacagcttctgtggctccgatttgccggttggaaaggaagttctaacactttgcaaggaaacccatgtt |
41557944 |
T |
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| Q |
107 |
cgcagattaggtcactcactctatctttttatattttcatcaatgtgtaatgttccattaaaccactaaattcgtccttgatcattgagattatgaatat |
206 |
Q |
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| T |
41557945 |
cgcagattaggtcactcactctatctttttatattttcatcaatgtgtaatgttccattaaaccactaaattcgtccttgatcattgagattatgaatat |
41558044 |
T |
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| Q |
207 |
ttttaaaaggtgtgtgactctgtcaaattttacttctgttagaacttctgaaagcatgctagggactaaattggtggtaagtggttaaatat |
298 |
Q |
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| T |
41558045 |
ttttaaaaggtgtgtgactctgtcaaattttacttctgttagaacttctgaaagcatgctagggactaaattggtggtaagtggttaaatat |
41558136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 41542081 - 41542225
Alignment:
| Q |
7 |
atcatcatttttgtttaatttctatgttctttacagcttctgtggctccgatttgccggttggaaaggaggttctaacactttgcaaggaaacccatgtt |
106 |
Q |
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| T |
41542081 |
atcatcatttttgtttaatttctatgttcttcacagcttctgtggctccgatttgccggtcggaaatgaagttctaacactttgcaaggaaacacgtgtt |
41542180 |
T |
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| Q |
107 |
cgcagattaggtcactcactctatctttttatattttcatcaatgtgt |
154 |
Q |
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| T |
41542181 |
catagattaggtcattcactctatcttt---tactttcatcaatgtgt |
41542225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19049548 - 19049596
Alignment:
| Q |
192 |
tgagattatgaatatttttaaaaggtgtgtgactctgtcaaattttact |
240 |
Q |
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| T |
19049548 |
tgagattatgaatattttgaaaaggtctcggactctgtcgaattttact |
19049596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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