View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_29 (Length: 285)
Name: NF17883_low_29
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4952416 - 4952155
Alignment:
| Q |
7 |
tccaagaatatcctcaaagtctaataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagtt |
106 |
Q |
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| T |
4952416 |
tccaacaataccctcaaagtctaataaaattctagccatggttcctagtgagatcagaggagtcaattatctaactcctcctgagaattcattccaagtt |
4952317 |
T |
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| Q |
107 |
caaccaaactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagca |
206 |
Q |
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| T |
4952316 |
caaccaaactttgtcttaccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagca |
4952217 |
T |
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| Q |
207 |
gcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaag |
268 |
Q |
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| T |
4952216 |
gcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgatgaaaggaag |
4952155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 10483249 - 10483415
Alignment:
| Q |
30 |
ataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtcttaccaca |
129 |
Q |
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| T |
10483249 |
ataaaattctagccatggttcctagtgagatgagaggagtcaattatctaactcctcttgagaattcattccatgttcaaccaaactttgtattgccaca |
10483348 |
T |
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| Q |
130 |
gaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatca |
196 |
Q |
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| T |
10483349 |
gaatgaaattccaaattaccatctaagtaatattttaggtactttaccaaacttccattacccatca |
10483415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 10483443 - 10483517
Alignment:
| Q |
194 |
tcatgtttaagcagcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaag |
268 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
10483443 |
tcatgtttaagtagcaactcaactacttctgatgaagcagatgaacttcagttcaatatcatcgacgaaaggaag |
10483517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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