View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17883_low_30 (Length: 283)

Name: NF17883_low_30
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17883_low_30
NF17883_low_30
[»] chr4 (9 HSPs)
chr4 (12-283)||(9137707-9137978)
chr4 (16-140)||(8040543-8040661)
chr4 (15-78)||(8417596-8417659)
chr4 (16-78)||(8035173-8035235)
chr4 (16-78)||(8411980-8412042)
chr4 (78-141)||(8035048-8035111)
chr4 (78-141)||(8417721-8417783)
chr4 (21-78)||(46191028-46191085)
chr4 (33-77)||(8405058-8405102)
[»] chr2 (1 HSPs)
chr2 (16-67)||(33085141-33085192)
[»] chr7 (2 HSPs)
chr7 (78-140)||(5477755-5477815)
chr7 (36-77)||(5477621-5477662)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 283
Target Start/End: Complemental strand, 9137978 - 9137707
Alignment:
Q  12 aagaaacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttgttcatgttggacgtaggttttgtttttcattat 111  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9137978 aagaaacaagaaataatggaaatagtggaacacttgcttcaaaacactacttcaatgactagagttgttcaagttggacgtaggttttgtttttcattat 9137879  T
Q  112 tttgaggttgatgcctcaatgttttttctgatggtggaagtcctgtgaatttcggaattgttcaacgaacatccgaaacaacttgttggttttgggctta 211  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9137878 tttgaggttgatgcctcaacgttttttctgatggtgcaagtcctgtgaatttcggaattgttcaacgaacatcccaaacaacttgttggttttgggctta 9137779  T
Q  212 tttctttattttgctcaaacctaaacgatatggtatgagatgatctcgcacaatatgtgatctcagaaccat 283  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9137778 tttctttattttgctcaatcctaaacgatatggtatgagatgatctcgcacaatatgtgatctcagaaccat 9137707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 8040661 - 8040543
Alignment:
Q  16 aacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttgttcatgttggacgtaggttttgtttttcattattttg 115  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| ||| || |||||   ||||| ||||   |||| |||||||||| |||||||||    
T  8040661 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcagtgcctaga---gttcaagttg---gtagcttttgtttttgattattttg 8040568  T
Q  116 aggttgatgcctcaatgttttttct 140  Q
    |||||||||||||||  ||||||||    
T  8040567 aggttgatgcctcaaccttttttct 8040543  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 8417596 - 8417659
Alignment:
Q  15 aaacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttg 78  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||    
T  8417596 aaacaagaaataatggaagtagtggaacacttgcttcaaaacacgacttcaatgcctagagttg 8417659  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 8035235 - 8035173
Alignment:
Q  16 aacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttg 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||    
T  8035235 aacaagaaataatggaagtagtggaacacttgcttcaaaacactactttaatgcctagagttg 8035173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 8411980 - 8412042
Alignment:
Q  16 aacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttg 78  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||    
T  8411980 aacaagaaataatggaagtagtgaaacacttgcttcaaaacactacttcaatgcctagagttg 8412042  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 8035111 - 8035048
Alignment:
Q  78 gttcatgttggacgtaggttttgtttttcattattttgaggttgatgcctcaatgttttttctg 141  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||  |||||||||    
T  8035111 gttcaagttggacgtagcttttgtttttcattattttgaggttcatgcctcaactttttttctg 8035048  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 8417721 - 8417783
Alignment:
Q  78 gttcatgttggacgtaggttttgtttttcattattttgaggttgatgcctcaatgttttttctg 141  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||  |||||||||    
T  8417721 gttcaagttggacgtagcttttgtttt-cattattttgaggttaatgcctcaaccttttttctg 8417783  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 46191085 - 46191028
Alignment:
Q  21 gaaataatggatgtagtggaacacttgcttcaaaacactacgtcaatgactagagttg 78  Q
    ||||||||||| ||||||||||| ||||||||||||||||  |||||| ||| |||||    
T  46191085 gaaataatggaagtagtggaacaattgcttcaaaacactatttcaatgcctaaagttg 46191028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 8405058 - 8405102
Alignment:
Q  33 gtagtggaacacttgcttcaaaacactacgtcaatgactagagtt 77  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||    
T  8405058 gtagtggaacacttgcttcaaaacactactccaatgcctagagtt 8405102  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 33085141 - 33085192
Alignment:
Q  16 aacaagaaataatggatgtagtggaacacttgcttcaaaacactacgtcaat 67  Q
    |||||||||||||||| | |||| |||||||||||||||||||||| |||||    
T  33085141 aacaagaaataatggaagcagtgaaacacttgcttcaaaacactacttcaat 33085192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 5477755 - 5477815
Alignment:
Q  78 gttcatgttggacgtaggttttgtttttcattattttgaggttgatgcctcaatgttttttct 140  Q
    |||||||||||| |||| |||||||||||||||  ||||| ||||||||||||  ||||||||    
T  5477755 gttcatgttggatgtagcttttgtttttcatta--ttgagcttgatgcctcaactttttttct 5477815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 5477621 - 5477662
Alignment:
Q  36 gtggaacacttgcttcaaaacactacgtcaatgactagagtt 77  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  5477621 gtggaacacttgcttcaaaacactactccaatgcctagagtt 5477662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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