View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_4 (Length: 636)
Name: NF17883_low_4
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 138 - 621
Target Start/End: Complemental strand, 8827826 - 8827342
Alignment:
| Q |
138 |
aattagcagtccatttagtactatagtaacaagtttattatgtcaattagattattaaaaaagccaccaaattcatctgaagaaagaaaatatacctaac |
237 |
Q |
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| T |
8827826 |
aattagcagtccaattagtactatagtaacaagtttattatgtcaattagattattaaaaaagccaccaaattcatctgaagaaagaaaatatacctaac |
8827727 |
T |
|
| Q |
238 |
acctacgatgtcacggaattcctcgtccatgcttcgaagcatgtagttgtggaaatcgtatgttagaggcaggtcatgagtctataaaacaccggnnnnn |
337 |
Q |
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| T |
8827726 |
acctacgatgtcacggaattcctcgtccatgcttcgaagcatgtagttgtggaaatcgtatgttagaggaaggtcatgagtctataaaacaccggaaaaa |
8827627 |
T |
|
| Q |
338 |
nnn-caataaaaggaaaaatgactatccattttttatgtaagttacacttatgttgtgataaaagaataatactcacagtaatgaagcctaagcgcaatg |
436 |
Q |
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| T |
8827626 |
taaacaataaaaggaaaaatgactatccattttttatgtaagttacacttatgttgtgataaaagaataatactcacagtaatgaagcctaagcgcaatg |
8827527 |
T |
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| Q |
437 |
ccatgtaatcagtgcgactgatggaactccagaattggcgactgaaacatagctgcagcatattttcatcaaccatatcagtattctaataacgatatga |
536 |
Q |
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| T |
8827526 |
ccatgtaatcagtgcgactgatggaactccagaattggcgactgaaacatagctgcagcatattttcatcaaccatatcagtattctaataacgatatga |
8827427 |
T |
|
| Q |
537 |
aaatgttggaaaagttgacaaagaaactttaaggatgggatgtaccagccaaacaagaattttgtgatgactccaaggatgagat |
621 |
Q |
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| T |
8827426 |
aaatgttggaaaagttgacaaagaaactttaaggatgggatgtaccagccaaacaagaattttgtgatgactccaaggatgagat |
8827342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 8827918 - 8827814
Alignment:
| Q |
16 |
atcagataaactctcaaattaatcagaacataaagtaacgtgtaacgaaaaaatagcaaactaagactgcatcgactcgccattattaaatttaattaga |
115 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8827918 |
atcagataaactatcaaattaatcagaatataaagtaacgtgtaacgaaaaa-tagcaaactaagactgcatcgactcgccattattaaatttaattagc |
8827820 |
T |
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| Q |
116 |
agtcca |
121 |
Q |
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|||||| |
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| T |
8827819 |
agtcca |
8827814 |
T |
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