View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17883_low_6 (Length: 507)
Name: NF17883_low_6
Description: NF17883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17883_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 40644553 - 40645036
Alignment:
| Q |
16 |
taatgatcaattttgatttctttaataatcaatatgaacacggttcaacaatcctctcaaaatccctnnnnnnnn--ctcctctcaaagaaatatgaaca |
113 |
Q |
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| T |
40644553 |
taatgatcaattttgctttctttaataatcaatatgaacacggttcaacaatcctctcaaaatccctaaaaaaagaactcctctcaaagaaatatgaaca |
40644652 |
T |
|
| Q |
114 |
tggttcaaaaataaagtgaacaagactcagctccctcgctatttcggcctatcacatttgcaggactccattatttgcttcggtgcaacaagatacttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40644653 |
tggttcaaaaataaagtgaacaagactcagctccctcgctatttcggcctatcacatttgcacgactccattatttgcttcggtgcaacaagatacttct |
40644752 |
T |
|
| Q |
214 |
atttgaaagttggagaaagataacattttttatttatttatt----gtacaagagaaggctgaagcccaagtcnnnnnnnnnnnnnattcaagagaaaga |
309 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |
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| T |
40644753 |
atttgaaagttggagaaagataacattatttatttatttatttattgtacaagagagggctgaagcccaagtcttttttattttttattcaagagaaaga |
40644852 |
T |
|
| Q |
310 |
tgactttattcgattcaaagtgcctatagagacattttggaacacaacaatgcatcaatgcataaccgaatgaggggtctttctacacggagaagttaaa |
409 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40644853 |
tgactttattcgattcaaattgcctataaagacattttggaacacaacaatgcatcaatgcataaccggatgaggggtctttctacacggagaagttaaa |
40644952 |
T |
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| Q |
410 |
ccatctccaaaggtgaagaatcttgcatggagattaggttgcgatggtctttctacacggggtgcacctggcgatgtccattgt |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644953 |
acatctccaaaggtgaagaatcttgcatggagattaggttgcgatggtctttctacacggggtgcacctggcgatgtccattgt |
40645036 |
T |
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