View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_high_3 (Length: 595)
Name: NF17884_high_3
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 45681683 - 45681121
Alignment:
| Q |
17 |
agtaatgacccaatttttggagagaaagtatagtactcagacttcaacctagggggaagcctaactgtctgtcaagtgtgagtgatgaaaaagtacacat |
116 |
Q |
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| T |
45681683 |
agtaatgacccaatttttggagagaaagcatagtactcagacttcaacctagggggaagcctaactgtctgtcaagtgtgagtgatgaaaaagtacacat |
45681584 |
T |
|
| Q |
117 |
tagctcaaaataagctaaatgaagatgatagaagagaacatgcatatatagaaaagccatattgattttgttaagaatatggtgctatgttcattctcta |
216 |
Q |
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| T |
45681583 |
tagttcaaaataagctaaatgaagatgatagaagagaacatgcatatatagaaaagccatattgattttgttaagaatatggtgctatgttcattctcta |
45681484 |
T |
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| Q |
217 |
ttgtttgttgcttggcccattactcgacagattatgcataatgcaaaggtgaggctaatgttgtacatggtgaatcaaacaccgatggaaaaatgaaaga |
316 |
Q |
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| T |
45681483 |
ttgtttgttgcttggcccattactcgacagattatgcataatgcaaaggtgaggctaatgttgtacatggtgaatcaaacaccgatggaaaaatgaaaga |
45681384 |
T |
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| Q |
317 |
caataaaaactgataacgccttgtaaataaaaagtacctccattttatgaataatttgtgtccgatgcagagaccaaaaagtcgatttatatcttggatc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45681383 |
caataaaaactgataacgccttgtaaataaaaagtacctccattttatgaataatttgtgtccgatgcagagaccaaaaagtcgatt--tatcttggatc |
45681286 |
T |
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| Q |
417 |
tcaaaggtacaagtttgattagcgatttgggaccttgtgaacaagaagatttttagaagtagagatgttatattttttaggatcaggcagctaaatattc |
516 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45681285 |
tcaaagatacaagtttgattagcgatttgggaccttgtgaacaagaagatttttagaagtagagatgttatattttttaggatcaggcagctaaatattc |
45681186 |
T |
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| Q |
517 |
caaacagtatgagaaaacttagtcaaaggtcaaacagtagttgtaatcagaagtcgtcccctatg |
581 |
Q |
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| T |
45681185 |
caaacagtatgagaaaacttagtcaaaggtcaaacagtagttgtaatcagaagtcgtcccctatg |
45681121 |
T |
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