View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_high_6 (Length: 287)
Name: NF17884_high_6
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 12040583 - 12040321
Alignment:
| Q |
10 |
tgattaatatgtcgtatatgacaactacgttttctacttcgtgttttattttttcagttggagtctgcaataccttactttataccagtttattagatta |
109 |
Q |
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| T |
12040583 |
tgattaatatgttgtatatgacaactacgttt-ctacttcgtgttttattttttcagttggagtctgcaataccttactttataccagtttattagatta |
12040485 |
T |
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| Q |
110 |
gatactggtttatcctttttcaacttgtgtagttgattgccatataggtttataaattccctttgttaagatttgtacctacacatgctaccctcctgaa |
209 |
Q |
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| T |
12040484 |
gatactggtttatcctttttcaacttgtgtagttgattgccatataggtttataaattccctttgttaagatttgtacctacacatgctaccctcctgaa |
12040385 |
T |
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| Q |
210 |
agtttctactgttatgg-tttgagttatatgttatctgcgacaaccggaaatgttaaacctttg |
272 |
Q |
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| T |
12040384 |
agtttctactgttatggttttgagttatatgttatctgcgaaaaccggaaatgttaaacctttg |
12040321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 12139766 - 12139962
Alignment:
| Q |
26 |
tatgacaactacgttttctacttcgtgttttattttttcagttggagtctgcaataccttactttataccagt-ttattagattagatactggtttatcc |
124 |
Q |
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| T |
12139766 |
tatgacaactacattttctacttcaagtttaattttttcagtcggagtctgcaataccttactttatattagtattagtatattagatacttatttattg |
12139865 |
T |
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| Q |
125 |
tttttcaacttgtgtagttgattgccatataggtttataaattccctttgttaagatttgtacctacacatgctaccctcctgaaagtttctactgtt |
222 |
Q |
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| T |
12139866 |
tttttcatcttgtggagttgattgccatataggtttctaaattccctttgtgaagatttattccca-tcacgttaccctcctgaaagtttatactgtt |
12139962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 12028715 - 12028589
Alignment:
| Q |
141 |
gttgattgccatataggtttataaattccctttgttaagatttgtacc-tacacatgctaccctcctgaaagtttctactgttatgg-tttgagttatat |
238 |
Q |
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| T |
12028715 |
gttgattgccatataggtttataaattccccttgtgaagatttgttccttacacatgctaccaccccgaaggtatctactgttatggttttgagctataa |
12028616 |
T |
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| Q |
239 |
gttatctgcgacaaccggaaatgttaa |
265 |
Q |
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| T |
12028615 |
gttatctgcgacaacctgaaatgttaa |
12028589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 12045901 - 12045830
Alignment:
| Q |
195 |
tgctaccctcctgaaagtttctactgttatgg-tttgagttatatgttatctgcgacaaccggaaatgttaa |
265 |
Q |
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| T |
12045901 |
tgctaccatcccgaaagtttctactgttatggttttaagctaaaagttatccgcgacaacctgaaatgttaa |
12045830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 12029368 - 12029288
Alignment:
| Q |
14 |
taatatgtcgtatatgacaactacg-ttttctacttcgtgttttattttttcagttggagtctgcaataccttactttata |
93 |
Q |
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| T |
12029368 |
taatatgttgtatatgacaattatgcttttttactttgagtttaatctttgcagttggagtctgcaatgacttactttata |
12029288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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