View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17884_low_2 (Length: 621)

Name: NF17884_low_2
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17884_low_2
NF17884_low_2
[»] chr2 (2 HSPs)
chr2 (1-467)||(10912983-10913451)
chr2 (465-605)||(10914290-10914430)
[»] chr1 (1 HSPs)
chr1 (374-443)||(11244713-11244782)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 10912983 - 10913451
Alignment:
Q  1 caagttacaacgagtcaacgacatttttcttttaaatagtttcctaaggctcc---ctattatccttgcttggctgagagtattagtagcagtatctgca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||    
T  10912983 caagttacaacgagtcaacgacatttttcttttaaatagtttcctaaggctagggactattatccttgcttggctgagagtattagtagcagtatctgca 10913082  T
Q  98 gaaaagttaacgtcgttgtattatgaagcagtacactcttcagatttcttgttaatgttacatggtgctgcattcatcaccctgcaaacataatactaaa 197  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10913083 gaaaagttaacgtcattgtattatgaagcagtacactcttcagatttcttgttaatgttatatggtgctgcattcatcaccctgcaaacataatactaaa 10913182  T
Q  198 tgcttaagtaatgtaaaatactacaaatgctgagttttagtaaaattagcaaagttattatcttcgttacccctcaatttgaaggggcgcnnnnnnngta 297  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||    
T  10913183 tgcttaagtaatgtaaaatactacaaatgctgagtgttagtaaaattagcaaagttattatcctcgttacccctcaatttgaaggggcgcaaaaaaaata 10913282  T
Q  298 atgtgtgtagaaatggttgcccttaagtctaggatggtaactatgtttttacttttatcaagaaaaggcatcaatactaacctttccttgcacttttcta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10913283 atgtgtgtagaaatggttgcccttaagtctaggatggtaactatg-ttttacttttatcaagaaaaggcatcaatactaacctttccttgcgcttttcta 10913381  T
Q  398 aaaatcgagccaaggatgctttccgagcctgaggtatcgctgcatataagattggtagtgaatttattaa 467  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  10913382 aaattcgagccaaggatgctttccgagcctgaggtatcgctgcataaaagattgatagtgaatttattaa 10913451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 465 - 605
Target Start/End: Original strand, 10914290 - 10914430
Alignment:
Q  465 taaatgtgtaaaatggatttgtttctcttcaatatgtaaaatgtagacaaatatccccaaacaagatttcaataaacaaaataatccaattgcaacaatg 564  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  10914290 taaatgtgtaaaatggatttgtttctcttcaatgtgtaaaatgtagacaaatatccccaaacaatatttcaataaacaaaataatccaattgcaataatg 10914389  T
Q  565 agaaatggtacttccaacatacctgacaccagcatggtaat 605  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10914390 agaaatggtacttccaacatacctgacaccagcatggtaat 10914430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 443
Target Start/End: Original strand, 11244713 - 11244782
Alignment:
Q  374 ctaacctttccttgcacttttctaaaaatcgagccaaggatgctttccgagcctgaggtatcgctgcata 443  Q
    ||||||||||||||| ||| || |||||||||||||| |||||||| ||||| || ||||| ||||||||    
T  11244713 ctaacctttccttgcgcttctccaaaaatcgagccaatgatgctttgcgagcttgcggtatagctgcata 11244782  T

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