View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17884_low_4 (Length: 505)

Name: NF17884_low_4
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17884_low_4
NF17884_low_4
[»] chr3 (25 HSPs)
chr3 (14-488)||(9765720-9766194)
chr3 (237-364)||(22157796-22157926)
chr3 (225-364)||(6077833-6077976)
chr3 (95-152)||(13899501-13899558)
chr3 (56-156)||(50334705-50334805)
chr3 (53-156)||(39340766-39340869)
chr3 (161-211)||(22157689-22157739)
chr3 (98-160)||(51471221-51471283)
chr3 (53-103)||(53377636-53377686)
chr3 (91-132)||(16607666-16607707)
chr3 (111-160)||(16876437-16876486)
chr3 (53-102)||(20336988-20337037)
chr3 (51-156)||(34359324-34359429)
chr3 (55-160)||(44446918-44447023)
chr3 (112-156)||(17268885-17268929)
chr3 (53-113)||(20315086-20315146)
chr3 (52-103)||(44809200-44809251)
chr3 (110-160)||(28769572-28769622)
chr3 (53-103)||(53518147-53518197)
chr3 (402-455)||(6077737-6077790)
chr3 (426-487)||(22157944-22158005)
chr3 (52-84)||(117816-117848)
chr3 (53-105)||(27492196-27492248)
chr3 (53-113)||(39340970-39341030)
chr3 (53-101)||(44648251-44648299)
[»] chr8 (28 HSPs)
chr8 (14-488)||(43651316-43651790)
chr8 (53-156)||(12596849-12596952)
chr8 (231-306)||(22647929-22648006)
chr8 (55-160)||(33038212-33038317)
chr8 (56-160)||(8026015-8026119)
chr8 (53-160)||(39344578-39344685)
chr8 (53-156)||(24916108-24916210)
chr8 (57-160)||(26938670-26938773)
chr8 (53-136)||(26938953-26939036)
chr8 (56-103)||(42499723-42499770)
chr8 (75-145)||(33695139-33695209)
chr8 (179-227)||(22647851-22647898)
chr8 (53-103)||(2827178-2827228)
chr8 (53-103)||(26938536-26938586)
chr8 (110-156)||(30743944-30743990)
chr8 (114-160)||(32796989-32797035)
chr8 (53-103)||(33322901-33322951)
chr8 (53-103)||(37967904-37967954)
chr8 (53-103)||(41590699-41590749)
chr8 (91-156)||(16483777-16483841)
chr8 (53-154)||(17153533-17153634)
chr8 (97-138)||(26736030-26736071)
chr8 (54-103)||(30806214-30806263)
chr8 (110-151)||(42024060-42024101)
chr8 (54-102)||(2415075-2415123)
chr8 (94-158)||(7632894-7632958)
chr8 (55-103)||(17842833-17842881)
chr8 (55-103)||(42023896-42023944)
[»] chr5 (18 HSPs)
chr5 (14-488)||(21114525-21114999)
chr5 (55-156)||(19343549-19343650)
chr5 (231-306)||(27030049-27030126)
chr5 (51-160)||(39058523-39058632)
chr5 (166-227)||(27030157-27030217)
chr5 (91-152)||(38607329-38607390)
chr5 (54-103)||(5459047-5459096)
chr5 (57-156)||(14820485-14820584)
chr5 (52-103)||(30698555-30698606)
chr5 (53-104)||(36876222-36876273)
chr5 (51-160)||(2299243-2299356)
chr5 (53-103)||(4463129-4463179)
chr5 (53-103)||(8404269-8404319)
chr5 (53-103)||(28456469-28456519)
chr5 (53-103)||(40158147-40158197)
chr5 (91-160)||(16089718-16089787)
chr5 (51-104)||(17742214-17742267)
chr5 (110-154)||(22861027-22861071)
[»] chr2 (22 HSPs)
chr2 (229-480)||(24863552-24863802)
chr2 (53-160)||(24490618-24490725)
chr2 (62-160)||(6191094-6191192)
chr2 (54-160)||(35954221-35954326)
chr2 (55-160)||(29242627-29242732)
chr2 (53-160)||(34904006-34904113)
chr2 (67-155)||(30632608-30632696)
chr2 (52-160)||(31994789-31994897)
chr2 (55-126)||(17448888-17448959)
chr2 (53-155)||(30669077-30669177)
chr2 (110-156)||(39293180-39293226)
chr2 (91-160)||(855598-855667)
chr2 (50-103)||(10357686-10357739)
chr2 (55-103)||(4785451-4785499)
chr2 (67-133)||(30660409-30660475)
chr2 (53-103)||(33031385-33031435)
chr2 (53-103)||(35498452-35498502)
chr2 (53-103)||(37592762-37592812)
chr2 (53-103)||(42274174-42274224)
chr2 (52-101)||(13371869-13371918)
chr2 (91-132)||(21594705-21594746)
chr2 (52-84)||(42488050-42488082)
[»] chr4 (18 HSPs)
chr4 (161-321)||(51862130-51862291)
chr4 (161-378)||(39482294-39482513)
chr4 (54-160)||(40390886-40390991)
chr4 (79-160)||(47472207-47472287)
chr4 (51-103)||(15025986-15026038)
chr4 (408-487)||(51862008-51862087)
chr4 (91-132)||(14806127-14806168)
chr4 (93-154)||(15025813-15025874)
chr4 (95-156)||(22593354-22593415)
chr4 (391-459)||(7807621-7807689)
chr4 (52-152)||(33894459-33894559)
chr4 (53-133)||(38377803-38377883)
chr4 (53-156)||(10573947-10574050)
chr4 (57-103)||(23473360-23473406)
chr4 (98-160)||(26081225-26081287)
chr4 (53-103)||(40391099-40391149)
chr4 (158-227)||(51861082-51861150)
chr4 (111-155)||(7985823-7985867)
[»] scaffold0039 (2 HSPs)
scaffold0039 (249-463)||(81374-81584)
scaffold0039 (158-216)||(81640-81698)
[»] chr6 (23 HSPs)
chr6 (158-227)||(13550172-13550240)
chr6 (54-160)||(10516635-10516741)
chr6 (55-160)||(3807066-3807171)
chr6 (55-160)||(17957027-17957132)
chr6 (249-311)||(19380815-19380875)
chr6 (98-160)||(10311678-10311740)
chr6 (158-216)||(19380931-19380989)
chr6 (52-156)||(24672264-24672368)
chr6 (53-160)||(6197806-6197912)
chr6 (53-160)||(25042900-25043006)
chr6 (91-160)||(3336052-3336121)
chr6 (91-132)||(14896834-14896875)
chr6 (79-160)||(15691443-15691524)
chr6 (55-103)||(33518720-33518768)
chr6 (55-113)||(3807263-3807321)
chr6 (51-113)||(5644599-5644661)
chr6 (53-103)||(30661148-30661198)
chr6 (54-103)||(5087068-5087117)
chr6 (91-132)||(14198632-14198673)
chr6 (55-160)||(30465223-30465327)
chr6 (61-101)||(4408911-4408951)
chr6 (56-160)||(12611793-12611897)
chr6 (55-103)||(34187673-34187721)
[»] chr7 (22 HSPs)
chr7 (54-156)||(25067648-25067750)
chr7 (62-165)||(34471227-34471330)
chr7 (161-227)||(9332749-9332814)
chr7 (229-321)||(9332847-9332942)
chr7 (111-160)||(13009431-13009480)
chr7 (55-160)||(20132051-20132156)
chr7 (54-156)||(39596814-39596920)
chr7 (53-156)||(11297753-11297856)
chr7 (53-160)||(27567732-27567839)
chr7 (53-103)||(10463171-10463221)
chr7 (426-487)||(9333003-9333064)
chr7 (91-132)||(12925246-12925287)
chr7 (308-364)||(27273015-27273072)
chr7 (79-156)||(38487341-38487418)
chr7 (56-160)||(40751697-40751801)
chr7 (53-104)||(6588569-6588620)
chr7 (50-145)||(21367162-21367257)
chr7 (53-103)||(7238940-7238990)
chr7 (50-103)||(13009269-13009322)
chr7 (55-160)||(30851702-30851806)
chr7 (110-146)||(2316119-2316155)
chr7 (158-226)||(9333879-9333946)
[»] scaffold0755 (2 HSPs)
scaffold0755 (231-306)||(5432-5509)
scaffold0755 (179-216)||(5547-5584)
[»] scaffold0020 (1 HSPs)
scaffold0020 (56-160)||(152236-152340)
[»] chr1 (13 HSPs)
chr1 (50-160)||(20985920-20986030)
chr1 (50-103)||(26020272-26020325)
chr1 (50-113)||(13393010-13393072)
chr1 (53-160)||(33753026-33753132)
chr1 (53-101)||(5430439-5430487)
chr1 (56-103)||(48410514-48410561)
chr1 (53-103)||(28701286-28701336)
chr1 (95-156)||(13392847-13392908)
chr1 (91-152)||(16545483-16545544)
chr1 (52-101)||(43504656-43504705)
chr1 (56-133)||(50919373-50919449)
chr1 (53-117)||(23230791-23230855)
chr1 (53-101)||(33707244-33707292)
[»] scaffold0005 (2 HSPs)
scaffold0005 (62-157)||(253814-253909)
scaffold0005 (91-132)||(33559-33600)
[»] scaffold0002 (1 HSPs)
scaffold0002 (91-132)||(363166-363207)
[»] scaffold0707 (1 HSPs)
scaffold0707 (55-103)||(7264-7312)
[»] scaffold0536 (1 HSPs)
scaffold0536 (77-148)||(3875-3946)
[»] scaffold0233 (1 HSPs)
scaffold0233 (53-103)||(16832-16882)
[»] scaffold0014 (1 HSPs)
scaffold0014 (53-103)||(123502-123552)
[»] scaffold0112 (1 HSPs)
scaffold0112 (54-103)||(27063-27112)
[»] scaffold0407 (2 HSPs)
scaffold0407 (56-104)||(1505-1553)
scaffold0407 (56-104)||(7971-8019)


Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Complemental strand, 9766194 - 9765720
Alignment:
Q  14 tactacactgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9766194 tactacactgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttattttctagaaaa 9766095  T
Q  114 ttttaatgataattttagtcctctacaatattgtagtttgtaagaattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9766094 ttttaatgataattttagtcctctacaatattgtagtttgtaagaattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaa 9765995  T
Q  214 aaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9765994 aaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcatagaagagataagaaatatagatcttcggtgaaacctgtc 9765895  T
Q  314 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgtcttgaaaagaaaaacatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  9765894 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccagtttgttgattctttgtcttgcaaagaaaaacatt 9765795  T
Q  414 agaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactta 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9765794 agaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactta 9765720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 22157796 - 22157926
Alignment:
Q  237 gaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatcttt 332  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||||| |||||| ||| || ||||||| |||||||||||| ||| ||||  | |    
T  22157796 gaaatgtatctttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaatcctgtcatgtttccctatctaaatat 22157895  T
Q  333 ggatgaaatgtctcttgcaattgtaatttgga 364  Q
     ||||||||||||||| |||||||||| ||||    
T  22157896 agatgaaatgtctctt-caattgtaatctgga 22157926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 6077976 - 6077833
Alignment:
Q  225 tgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacc-tgtcatg-tttcct 322  Q
    ||||||||||||||||||||| | ||| | |  | |||| | ||||| ||||||| || ||||||||||||   | ||||||||| ||||||| ||||||    
T  6077976 tgtcaaatggatgaaatgtatatttctctttgttaaaataaatggatgataaaagggaaaagaaatatagaaacttggtgaaaccctgtcatgctttcct 6077877  T
Q  323 ctctatctttggatgaaa--tgtctcttgcaattgtaatttgga 364  Q
    || |||||||||||||||  | ||||||||||||||||||||||    
T  6077876 ctttatctttggatgaaacgtctctcttgcaattgtaatttgga 6077833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 13899501 - 13899558
Alignment:
Q  95 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||| ||| |||||||||||| |||||||||||||| | |||||||||||||    
T  13899501 aagtttagttcctataaaattttaatggtaattttagtcctccataatattgtagttt 13899558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 50334805 - 50334705
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||| |||||||| |||||||||| |  |  |||| | |||| |  ||| |||||||||||||||||||||||| || | ||||||||||||||||    
T  50334805 ttaaatatatttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgta 50334706  T
Q  156 a 156  Q
    |    
T  50334705 a 50334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 39340766 - 39340869
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||||||||| |||  ||| ||||| |  |  |||||||||||||  ||| ||| |||||||| ||||||||||| || | |||||||||||||    
T  39340766 gggttaaatatgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattgtagttt 39340865  T
Q  153 gtaa 156  Q
    ||||    
T  39340866 gtaa 39340869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 22157689 - 22157739
Alignment:
Q  161 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaatt 211  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||||||||    
T  22157689 tgaccaataaaatgaccaactaaatcatccattcatactgaaattgaaatt 22157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 51471221 - 51471283
Alignment:
Q  98 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||||||| ||||||||| ||||||||||| ||||| ||||||||  ||||| |||||||    
T  51471221 tttagtttctataaaattttattgataattttactcctccacaatattaaagtttataagaat 51471283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 53377686 - 53377636
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||||| ||||| ||||||||||    
T  53377686 gggttaaatatgtttttagtccctataaaattaggaacttctaagtttagt 53377636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 16607707 - 16607666
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  16607707 ttttaagtttagttcctataaaattttaatgataattttagt 16607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 16876437 - 16876486
Alignment:
Q  111 aaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||||||  |||||||||||||| | |||||||||||||||||||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaat 16876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 20337037 - 20336988
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttag 102  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  20337037 gggttaaatatgtttttagtccctacaaaattacaaacttttaagtttag 20336988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 34359324 - 34359429
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagt 150  Q
    ||||||||||||||||||||||   || ||||| |  |  |||||||||||||   || |||||||||||| |||||||| ||||| | |||||| ||||    
T  34359324 atgggttaaatatgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagt 34359423  T
Q  151 ttgtaa 156  Q
    ||||||    
T  34359424 ttgtaa 34359429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 44447023 - 44446918
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||||||||  ||||| |||||  |  ||||||||||| |  | | |||||||||||  |||||||||||||  | |||||| ||||||||    
T  44447023 gttaaatatgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 44446924  T
Q  155 aagaat 160  Q
    ||||||    
T  44446923 aagaat 44446918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 17268885 - 17268929
Alignment:
Q  112 aattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||||||||||||||||||||| |||| | |||||||||||||||    
T  17268885 aattttaatgataattttagtcttctatattattgtagtttgtaa 17268929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 20315146 - 20315086
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||||||||||||||||  ||| ||||||| ||||||| ||||||||| |||| ||||    
T  20315146 gggttaaatatgtttttagtcactacaaaattacaaactttcaagtttagtctctataaaa 20315086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 44809251 - 44809200
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||| ||  |||||||||| ||| ||||||||||||||    
T  44809251 tgggttaaatatgtttttggtccctataaaattggaaccttttaagtttagt 44809200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 28769622 - 28769572
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||||||| | ||||| |||||| | |||||||||||||||||||||    
T  28769622 aaaattttaatggtgatttttgtcctccataatattgtagtttgtaagaat 28769572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 53518197 - 53518147
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||| | | ||||||||||||||    
T  53518197 gggttaaatatgtttttagtccctataaaattgggaccttttaagtttagt 53518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 6077790 - 6077737
Alignment:
Q  402 aagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaata 455  Q
    |||||||||| ||||| || ||||||||||||||||| | ||||||| ||||||    
T  6077790 aagaaaaacaatagaactggtcaatcctcaattctcatttgcaattgtcaaata 6077737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 487
Target Start/End: Original strand, 22157944 - 22158005
Alignment:
Q  426 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactt 487  Q
    ||||||||||||| |||||||| | ||||||||||||| || ||| |||| || ||||||||    
T  22157944 tcctcaattctcattagcaattagaaaatatagatagaaaaactgccatacattagttactt 22158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 117848 - 117816
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaatt 84  Q
    ||||||||||||||||||||| |||||||||||    
T  117848 tgggttaaatatgtttttagtttctataaaatt 117816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27492196 - 27492248
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagttt 105  Q
    |||||||||||||||||| | | ||||||||| | | ||||||||||||||||    
T  27492196 gggttaaatatgtttttaatctatataaaattgggatcttttaagtttagttt 27492248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 39341030 - 39340970
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    |||||||||||||||||| |  ||||||||||| || |||| ||||||||| |||| ||||    
T  39341030 gggttaaatatgtttttaatccctataaaattacaagctttcaagtttagtctctacaaaa 39340970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 44648299 - 44648251
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    ||||||||||| ||||||||  ||||||||||| ||||||| |||||||    
T  44648299 gggttaaatatttttttagtccctataaaattacaaactttcaagttta 44648251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 43651316 - 43651790
Alignment:
Q  14 tactacactgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43651316 tactacattgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaa 43651415  T
Q  114 ttttaatgataattttagtcctctacaatattgtagtttgtaagaattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaa 213  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43651416 ttttaatgataattttagtccaccacaatattgtagtttgtaagaattgaccaataaaatcacaaactaaattattcattcatactaaaattgaaattaa 43651515  T
Q  214 aaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtc 313  Q
    ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43651516 aaaataagaagtgtcaaatagatgaaatatatctctctttgttatgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtc 43651615  T
Q  314 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgtcttgaaaagaaaaacatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |    
T  43651616 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccattttcttgattctttgtcttgaaaagaaaaacaat 43651715  T
Q  414 agaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactta 488  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43651716 agaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctgtcataaatcagttactta 43651790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 12596849 - 12596952
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||||||||||||| |||| ||||| | ||  |||||||||||||  ||| |||||||||||| |||||||||||||| | |||||||||||||    
T  12596849 gggttaaatatgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagttt 12596948  T
Q  153 gtaa 156  Q
    ||||    
T  12596949 gtaa 12596952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 22647929 - 22648006
Alignment:
Q  231 atggatgaaatgtatctct--ctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 306  Q
    ||||||||||||||||| |  || ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  22647929 atggatgaaatgtatctttatctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 22648006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 33038212 - 33038317
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    |||||| |||||||||||  ||| ||||  |  ||||||||||||||||| |||  |||||||||||| ||||||| ||||| | ||||||| |||||||    
T  33038212 gttaaaaatgtttttagtccctacaaaaacatcaacttttaagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgt 33038311  T
Q  155 aagaat 160  Q
    ||||||    
T  33038312 aagaat 33038317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 8026015 - 8026119
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||||||| ||||  ||||||||||| ||| ||| ||||||| | |||| |||||||||||| | ||| |||||||| | ||| | ||||||||||    
T  8026015 ttaaatatgtttatagtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgta 8026114  T
Q  156 agaat 160  Q
    |||||    
T  8026115 agaat 8026119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 39344578 - 39344685
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||| ||||||||   || ||||| | ||| |||||| || |||  ||| |||||||||||| ||| |||||||||| | |||||||||||||    
T  39344578 gggttaaatatatttttagttcatacaaaatcataaatttttaaattaagtccctataaaattttaatggtaactttagtcctccataatattgtagttt 39344677  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  39344678 gtaagaat 39344685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 24916210 - 24916108
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||   |||||||| |  |  |||||||||||||  ||| |||||||||||| ||||||| |||||| | |||| ||||||||    
T  24916210 gggttaaatatgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaata-tgtagttt 24916112  T
Q  153 gtaa 156  Q
    ||||    
T  24916111 gtaa 24916108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 26938773 - 26938670
Alignment:
Q  57 taaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||||||| |||||||  ||||||||| | ||  ||| |||||||||  ||| |||||||||||| ||||||| |||||| | ||| | |||||||||||    
T  26938773 taaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaa 26938674  T
Q  157 gaat 160  Q
    ||||    
T  26938673 gaat 26938670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 26939036 - 26938953
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctc 136  Q
    |||||||||||| |||||||  ||||||||| | ||  ||| |||||||||  ||| |||||||||||| ||||||||||||||    
T  26939036 gggttaaatatgcttttagtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctc 26938953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 42499770 - 42499723
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  42499770 ttaaatatgttttttgtatctataaaattataaacttttaaatttagt 42499723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 33695139 - 33695209
Alignment:
Q  75 ctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatatt 145  Q
    |||||||||||  |  ||| ||||||||| | || |||| |||||||||||||||||||||||||||||||    
T  33695139 ctataaaattatgagttttcaagtttagtctttataaaactttaatgataattttagtcctctacaatatt 33695209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 22647851 - 22647898
Alignment:
Q  179 actaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 227  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  22647851 actaaataatccattcatactgaaattgaaatt-aaaaataagaagtgt 22647898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 2827228 - 2827178
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||| ||| ||||||||||||||    
T  2827228 gggttaaatatgtttttggtccctataaaatttgaagcttttaagtttagt 2827178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 26938536 - 26938586
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  ||| ||||||| || ||||||||||||||    
T  26938536 gggttaaatatgtttttagtccctacaaaattacaagcttttaagtttagt 26938586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 30743944 - 30743990
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||| ||||||| |||||||||||||| | |||||||||||||||||    
T  30743944 aaaactttaatgttaattttagtcctcaataatattgtagtttgtaa 30743990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 32796989 - 32797035
Alignment:
Q  114 ttttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||  |||||||||||||||| | |||||||||||||||||||    
T  32796989 ttttaatagtaattttagtcctctaaagtattgtagtttgtaagaat 32797035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33322951 - 33322901
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||| |||||||||||| || ||||||||||| ||||||| ||||||||||    
T  33322951 gggtaaaatatgtttttggtctctataaaattggaaacttctaagtttagt 33322901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 37967954 - 37967904
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||||| ||||| ||||||||||    
T  37967954 gggttaaatatgtttttggtccctataaaattaggaacttctaagtttagt 37967904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 41590749 - 41590699
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||| | | ||||||||||||||    
T  41590749 gggttaaatatgtttttagttcctataaaattgggaccttttaagtttagt 41590699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 16483777 - 16483841
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||||||||||||  ||  |||||||||||| ||||||||||| || | |||||||||||||||||    
T  16483777 ttttaagtttagtccctgtaaaattttaatggtaattttagtcttc-aaaatattgtagtttgtaa 16483841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Original strand, 17153533 - 17153634
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||| ||||| |  |  ||||||| |||||  |||  ||||||||||| |||||||||||||| | ||||||  |||||    
T  17153533 gggttaaatatgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagttt 17153632  T
Q  153 gt 154  Q
    ||    
T  17153633 gt 17153634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 26736071 - 26736030
Alignment:
Q  97 gtttagtttctagaaaattttaatgataattttagtcctcta 138  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  26736071 gtttagtttctataaacttttaatgataattttagttctcta 26736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 30806214 - 30806263
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||| ||||| ||  |||||||||| ||||||||||||||||||    
T  30806214 ggttaaatatatttttggttcctataaaattggaaacttttaagtttagt 30806263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 42024101 - 42024060
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattgtagtt 151  Q
    |||||||||||| |||||||||||||| | ||||||||||||    
T  42024101 aaaattttaatgctaattttagtcctccaaaatattgtagtt 42024060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 2415123 - 2415075
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttag 102  Q
    |||||||||||||||||||  ||| ||||||| || |||||||||||||    
T  2415123 ggttaaatatgtttttagtccctacaaaattataagcttttaagtttag 2415075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 7632894 - 7632958
Alignment:
Q  94 taagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaaga 158  Q
    |||||||||| | || ||| ||||| ||||||||||||||||| |  ||||| ||||||||||||    
T  7632894 taagtttagtctttataaacttttattgataattttagtcctcaatgatattttagtttgtaaga 7632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 17842881 - 17842833
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||| ||  ||||||||||  |||||||||||||||||    
T  17842881 gttaaatatgtttttggtccctataaaattgaaaacttttaagtttagt 17842833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 42023896 - 42023944
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||  ||| ||||||| ||||||| |||||||||    
T  42023896 gttaaatatgtttttagtccctacaaaattacaaactttcaagtttagt 42023944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 21114525 - 21114999
Alignment:
Q  14 tactacactgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21114525 tactacattgtgaacttttagaaaaataaatattggaatgggttaaatatgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaa 21114624  T
Q  114 ttttaatgataattttagtcctctacaatattgtagtttgtaagaattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaa 213  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21114625 ttttaatgataattttagtccaccataatattgtagtttgtaagaattgaccaataaaatcacaaactaaattattcattcatactaaaattgaaattaa 21114724  T
Q  214 aaaataagaagtgtcaaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtc 313  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21114725 aaaataagaagtgtcaaatagatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtc 21114824  T
Q  314 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtcactgctcccagtttgttgattctttgtcttgaaaagaaaaacatt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |    
T  21114825 atgtttcctctctatctttggatgaaatgtctcttgcaattgtaatttggacgtccctgctcccattttcttgattctttgtcttgaaaagaaaaacaat 21114924  T
Q  414 agaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactta 488  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21114925 agaactgttcaatcctcaattctcattagcaattggcaaatatagatagagaacctatcataaatcagttactta 21114999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 19343549 - 19343650
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||||||||| ||| ||||| |  |  ||||||||||||| |||| ||||||||| ||||||||||||||||  | |||||||||||||||    
T  19343549 gttaaatatgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgt 19343648  T
Q  155 aa 156  Q
    ||    
T  19343649 aa 19343650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 27030126 - 27030049
Alignment:
Q  231 atggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 306  Q
    |||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  27030126 atggatgaaatgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 27030049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 39058632 - 39058523
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagt 150  Q
    |||||||||||||||||||| |  ||||||||| | ||  |||||||||||    ||| |||||||||||| |||||||||||||| | || ||||||||    
T  39058632 atgggttaaatatgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagt 39058533  T
Q  151 ttgtaagaat 160  Q
    ||||||||||    
T  39058532 ttgtaagaat 39058523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 27030217 - 27030157
Alignment:
Q  166 aataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 227  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27030217 aataaaatcgcagactaaataatccattcatactaaaattgaaatta-aaaataagaagtgt 27030157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 38607329 - 38607390
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||||||||||| |||||||||||  |||||||||||||  | |||||||||||||    
T  38607329 ttttaagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagttt 38607390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 5459047 - 5459096
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||| |||||||||||| ||  |||||||||||||    
T  5459047 ggttaaatatgtttttagtctctataaaattataagtttttaagtttagt 5459096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 14820584 - 14820485
Alignment:
Q  57 taaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    ||||||||||||||||  ||||||||| | ||  ||| |||||||||   || ||||||||| || ||||||||  |||||| |||| ||||||||||||    
T  14820584 taaatatgtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagtggtaattttaaccctctataataatgtagtttgtaa 14820485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 30698555 - 30698606
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||| ||  |||||||||| ||||||| ||||||||||    
T  30698555 tgggttaaatatgtttttggtccctataaaattggaaacttctaagtttagt 30698606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 36876273 - 36876222
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtt 104  Q
    ||||||||||||||||| ||  |||||||||| ||||||| |||||||||||    
T  36876273 gggttaaatatgtttttggtccctataaaattggaaacttctaagtttagtt 36876222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 2299243 - 2299356
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatatt----- 145  Q
    ||||||||||||||| ||||||   || ||| | | ||| |||| |||||||||| || |||||||||||| ||||||||||| || ||||||||         
T  2299243 atgggttaaatatgtgtttagtccttacaaagtcacaaattttttagtttagttt-tataaaattttaatggtaattttagtcttccacaatattatggt 2299341  T
Q  146 gtagtttgtaagaat 160  Q
    |||||||||||||||    
T  2299342 gtagtttgtaagaat 2299356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 4463179 - 4463129
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||| | ||||| ||||||||||    
T  4463179 gggttaaatatgtttttagtccctataaaattgggaacttctaagtttagt 4463129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 8404269 - 8404319
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||  |  |||||||||||| ||||||||||||||||    
T  8404269 gggttaaatatgtttttgatccctataaaattaggaacttttaagtttagt 8404319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 28456469 - 28456519
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||||| | ||||||||||||||    
T  28456469 gggttaaatatgtttttggtccctataaaattaggaccttttaagtttagt 28456519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 40158147 - 40158197
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||| | | ||||||||||||||    
T  40158147 gggttaaatatgtttttagtccctataaaattgggaccttttaagtttagt 40158197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 16089718 - 16089787
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||||||||  | | |||||||||||  |||||||||||||  | |||||| ||||||||||||||    
T  16089718 ttttaagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaat 16089787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 17742214 - 17742267
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtt 104  Q
    ||||||||||||||||||| ||  |||||||||| | | |||||||||||||||    
T  17742214 atgggttaaatatgtttttggtccctataaaattgggaccttttaagtttagtt 17742267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 22861071 - 22861027
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    |||||||||||  |||||||||||||||| | |||||||||||||    
T  22861071 aaaattttaattgtaattttagtcctctatagtattgtagtttgt 22861027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 229 - 480
Target Start/End: Original strand, 24863552 - 24863802
Alignment:
Q  229 aaatggatgaaatgtatctctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatgtttcctctctat 328  Q
    ||||||||||||||||| | ||| | |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24863552 aaatggatgaaatgtatttttctct-ttctaaaatcaatggatcataaaagagataagaaatatagatctttggtgaaacctgtcatgtttcctctctat 24863650  T
Q  329 ctttggatgaaatgtctcttgcaattgtaattt-ggacgtcactgctcccagttt-gttgattctttgtcttgaaaagaaaaacattagaattgttcaat 426  Q
    |||||||| ||||||||||||||||||| |||| ||||||| |||||  || |||  |||||||||| ||||||||  ||||  | ||||||| ||||||    
T  24863651 ctttggattaaatgtctcttgcaattgttatttgggacgtccctgctaacattttctttgattctttatcttgaaa--aaaataaatagaattattcaat 24863748  T
Q  427 cctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatca 480  Q
    |||||||| ||| ||||||||| || |||||||||||||| |||||||||||||    
T  24863749 cctcaattgtcattagcaattgacagatatagatagagaaactgtcataaatca 24863802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 24490725 - 24490618
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||| |||||||     ||||||||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||    
T  24490725 gggttaaatatgtttttagtccctacaaaattatgtgtttttaagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagttt 24490626  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  24490625 gtaagaat 24490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 6191094 - 6191192
Alignment:
Q  62 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||||||||||||||||| |  |   || |||||||||  ||| |||||||||||| |||||||||||||| | ||||||||| |||||||||||    
T  6191094 atgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtactttgtaagaat 6191192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 35954221 - 35954326
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttg 153  Q
    |||||||||||||||||||  ||||||| | | ||  ||| |||||||||  |||  ||||||||||| |||||||||||||| | ||||||||||||||    
T  35954221 ggttaaatatgtttttagtccctataaa-tcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttg 35954319  T
Q  154 taagaat 160  Q
    |||||||    
T  35954320 taagaat 35954326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 29242732 - 29242627
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    |||||||| |||||||||  ||| |||||||| |  ||| |||||||||  ||| |||||||||||| |||||||||||||| |  ||||| ||||||||    
T  29242732 gttaaatacgtttttagtccctacaaaattaggagttttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgt 29242633  T
Q  155 aagaat 160  Q
    ||||||    
T  29242632 aagaat 29242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 34904006 - 34904113
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||| ||||| | ||  |||||||||||||  ||  |||||| |||| ||||||||||| ||  | |||||||||||||    
T  34904006 gggttaaatatgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagttt 34904105  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  34904106 gtaagaat 34904113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 30632696 - 30632608
Alignment:
Q  67 tttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    ||||||||||| ||| | ||||  |||||| |||||| |||| |||||||||||| ||||||||||| |  | ||||||||||||||||    
T  30632696 tttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgta 30632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 31994897 - 31994789
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtt 151  Q
    |||||||| ||||||||||||  ||| ||||| | ||| ||||||||||| |  ||  |||||||||||  |||||||||| ||| | ||||||||| ||    
T  31994897 tgggttaagtatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaatt 31994798  T
Q  152 tgtaagaat 160  Q
    |||||||||    
T  31994797 tgtaagaat 31994789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 17448959 - 17448888
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataat 126  Q
    |||||||||||||||| |  |||||||||||  |  ||||||||||||||| || |||||||||||||||||    
T  17448959 gttaaatatgtttttaatccctataaaattatgagtttttaagtttagtttttataaaattttaatgataat 17448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 30669177 - 30669077
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||||||||  |||||||| ||| | ||||  |||||| |||||| |||| |||||||||||| ||||||||||| |  | |||||| ||||||    
T  30669177 gggttaaatatgttt--agtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagttt 30669080  T
Q  153 gta 155  Q
    |||    
T  30669079 gta 30669077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 39293226 - 39293180
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||||    
T  39293226 aaaattttaatggtaattttagtcctctaaaatattgtaatttgtaa 39293180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 855598 - 855667
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||||||||  ||| |||||||||||| ||||||||||||||    ||||||||||||||| ||||    
T  855598 ttttaagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaat 855667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 10357739 - 10357686
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||||| ||  |||||||||| ||||||| ||||||||||    
T  10357739 aatgggttaaatatgttttttgtccctataaaattggaaacttctaagtttagt 10357686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 4785499 - 4785451
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||||||||||||||||  || ||||| |||||||    
T  4785499 gttaaatatgtttttagtatctataaaattatgaatttttaggtttagt 4785451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 30660475 - 30660409
Alignment:
Q  67 tttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtc 133  Q
    ||||||||||| ||| | ||||  |||||| |||||| |||| |||| |||||||||||||||||||    
T  30660475 tttagtatctaaaaattcagaagtttttaattttagtctctataaaactttaatgataattttagtc 30660409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 33031435 - 33031385
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||  || |||||||||||| ||||| ||||||||||    
T  33031435 gggttaaatatgtttttgatacctataaaattaggaacttctaagtttagt 33031385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 35498452 - 35498502
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||| | | ||||||||||||||    
T  35498452 gggttaaatatgtttttagttcctataaaattgggaccttttaagtttagt 35498502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 37592762 - 37592812
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||| | || |||||||||||  |||||||||||||||||    
T  37592762 gggttaaatatgtttctggtctctataaaattgaaaacttttaagtttagt 37592812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 42274174 - 42274224
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||||| ||||| ||||||||||    
T  42274174 gggttaaatatgtttttggtccctataaaattaggaacttctaagtttagt 42274224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 13371869 - 13371918
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    ||||||| |||||||||| ||  |||||||||| ||||||||||||||||    
T  13371869 tgggttatatatgtttttggtccctataaaattggaaacttttaagttta 13371918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 21594705 - 21594746
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||| ||| ||| |||||||||||||||||||||||    
T  21594705 ttttaagtttcgttcctataaaattttaatgataattttagt 21594746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 42488082 - 42488050
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaatt 84  Q
    ||||||||||||||||||||| |||||||||||    
T  42488082 tgggttaaatatgtttttagtctctataaaatt 42488050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 51862291 - 51862130
Alignment:
Q  161 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatct--ctctttgttct 258  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||| ||| | ||| | | | |||||||  |||||||||||    
T  51862291 tgaccaataaaatcaccaactaaatcatccattcatactgaaattgaaattaaaaa-taagaaatgtaagatgaaagta-tgtatctttctctttgttct 51862194  T
Q  259 gaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgtttcc 321  Q
    ||||||| ||||| ||||||||||||| |||||| ||| || ||||||| ||||||||||||||    
T  51862193 gaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttcc 51862130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 161 - 378
Target Start/End: Original strand, 39482294 - 39482513
Alignment:
Q  161 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgtcaaatggatgaaatgtatct--ctctttgttct 258  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||||| ||||||| |||||||||| | ||| | | | |||||||  |||||||||||    
T  39482294 tgaccaataaaatgaccaactaaatcatccattcatactgaaattgaatttaaaaa-taagaagtgtaagatgaaagta-tgtatctttctctttgttct 39482391  T
Q  259 gaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgttt-cctctctatctttggatgaaatgtctcttgcaattgt 356  Q
    |||| || ||||| ||||||||||||| |||||| ||| || ||| ||| |||||||||||| ||| ||||  | | ||||||||||||||| |||||||    
T  39482392 gaaaccaatggatgataaaagagataataaatattgatatttggtaaaaccctgtcatgtttccctatctaaatatagatgaaatgtctctt-caattgt 39482490  T
Q  357 aatttgg-acgtcactgctccca 378  Q
    ||||||| ||||| |||||||||    
T  39482491 aatttggaacgtccctgctccca 39482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 40390886 - 40390991
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttg 153  Q
    |||||||||||||||||||  ||| ||||| |  |  ||| |||||||||| ||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  40390886 ggttaaatatgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctcca-tatattgtagtttg 40390984  T
Q  154 taagaat 160  Q
    |||||||    
T  40390985 taagaat 40390991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 47472207 - 47472287
Alignment:
Q  79 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||| ||| |||||||||||||| ||| |||||||||||| |||||||||||||  | ||||||||| ||| |||||||    
T  47472207 aaaattacaaatttttaagtttagtt-ctataaaattttaatggtaattttagtccttcataatattgtaatttataagaat 47472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 15026038 - 15025986
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||||||||||||    
T  15026038 atgggttaaatatgtttttagtcactacaaaattacaaacttttaagtttagt 15025986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 487
Target Start/End: Complemental strand, 51862087 - 51862008
Alignment:
Q  408 aacattagaattgttcaatcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactt 487  Q
    |||| |||||| | ||| ||||||||||||| ||||| || ||||||||||||||| || ||| |||| |||||||||||    
T  51862087 aacaatagaatcgctcattcctcaattctcattagcatttagcaaatatagatagaaaaactgccatagatcagttactt 51862008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 14806127 - 14806168
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  14806127 ttttaagtttagttcctataaaattttaatgataattttagt 14806168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 15025813 - 15025874
Alignment:
Q  93 ttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||  || |||||||||||| |||||||| ||||||| |||||| ||||||||    
T  15025813 ttaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttgt 15025874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 22593415 - 22593354
Alignment:
Q  95 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    ||||||||||||||  ||||||||||| | ||||||||| ||||||||||  ||||||||||    
T  22593415 aagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaa 22593354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 459
Target Start/End: Original strand, 7807621 - 7807689
Alignment:
Q  391 tttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaattggcaaatataga 459  Q
    |||||||||| |||||||||| ||| |  | ||||||||||||||| | ||||||| ||||||||||||    
T  7807621 tttgtcttgagaagaaaaacaatagtaccgctcaatcctcaattcttattagcaatcggcaaatataga 7807689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 33894559 - 33894459
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtt 151  Q
    ||||||||||||||  |||||  ||| ||||| | ||| ||| ||||||| | | || |||||||||||| ||||||||||| || | ||||||||||||    
T  33894559 tgggttaaatatgtcgttagttcctacaaaatcacaaattttcaagtttaatctgtataaaattttaatgttaattttagtcttccataatattgtagtt 33894460  T
Q  152 t 152  Q
    |    
T  33894459 t 33894459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 38377803 - 38377883
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtc 133  Q
    ||||||| ||||||||||||   || ||||| | ||| |||||||||||||  ||| |||||||||||| |||||||||||    
T  38377803 gggttaagtatgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttagtc 38377883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 10573947 - 10574050
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||   || ||||| | ||  ||| || ||||||||||| |||| | |||||  ||||||| ||||| | |||||||||||||    
T  10573947 gggttaaatatgtttttagttcttacaaaatcacaagttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgtagttt 10574046  T
Q  153 gtaa 156  Q
    ||||    
T  10574047 gtaa 10574050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 23473360 - 23473406
Alignment:
Q  57 taaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||| | ||||||||| | ||||||||||||||||    
T  23473360 taaatatgtttttagtctttataaaattgggaacttttaagtttagt 23473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 26081287 - 26081225
Alignment:
Q  98 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||||| | ||||||||| ||||||||||| ||||| ||||||||  ||||| |||||||    
T  26081287 tttagtttcgataaaattttattgataattttactcctccacaatattaaagtttataagaat 26081225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 40391149 - 40391099
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  ||||||||||| ||  |||||||||||||    
T  40391149 gggttaaatatgtttttagtccctataaaattacaagtttttaagtttagt 40391099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 51861150 - 51861082
Alignment:
Q  158 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 227  Q
    |||||| |||||||||||| |||||||||||||  ||| ||| | ||||||| |||||||||| ||||||    
T  51861150 aattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaa-taaaaaataaaaagtgt 51861082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 7985823 - 7985867
Alignment:
Q  111 aaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||||||||||||| ||||||| | |||||| |||||||||    
T  7985823 aaattttaatgataatttcagtcctcaataatattatagtttgta 7985867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 463
Target Start/End: Complemental strand, 81584 - 81374
Alignment:
Q  249 tctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctgtcatg-tttcctctctatctttggatgaaatgtctct 347  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| |||| | ||||||||||||||   ||||||||||||    
T  81584 tctttattctgaaatcagtggatcataaaagagataagaa--atagatctttggtgaaacctgacatgctatcctctctatctttatgtgaaatgtctct 81487  T
Q  348 tgcaattgtaattt-ggacgtcactgctcccagttt-gttgattctttgtcttgaaaagaaaaacattagaattgttcaatcctcaattctcaatagcaa 445  Q
    | |||||||||||| | ||||| ||| ||||| |||  ||| || ||||||||||||| ||||    |||||    |||||||||||||||||  |||||    
T  81486 t-caattgtaatttcgaacgtccctgatcccattttctttggttttttgtcttgaaaaaaaaa----tagaacctctcaatcctcaattctcatcagcaa 81392  T
Q  446 ttggcaaatatagataga 463  Q
    | |||||||||| |||||    
T  81391 tcggcaaatataaataga 81374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 81698 - 81640
Alignment:
Q  158 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaa 216  Q
    |||||||||||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  81698 aattgaccaataaaattaccaattaaattattcattcatactaaaattgaaatcaaaaa 81640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 13550172 - 13550240
Alignment:
Q  158 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 227  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  13550172 aattgaccaataaaatcaccaactaaattatccattcatactgaaattgaaa-taaaaaataagaagtgt 13550240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 10516741 - 10516635
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttg 153  Q
    |||||||||||||||||||  ||| ||||| | ||  |||||| ||||||  ||| |||||| ||||||||||||||| |||| | ||||||||||||||    
T  10516741 ggttaaatatgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttg 10516642  T
Q  154 taagaat 160  Q
    |||||||    
T  10516641 taagaat 10516635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 3807066 - 3807171
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||||||||  ||||||||| | ||  ||||| ||||||| |||| |||||||||||| ||||||| |||||| | ||| | |||||||||    
T  3807066 gttaaatatgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgt 3807165  T
Q  155 aagaat 160  Q
    ||||||    
T  3807166 aagaat 3807171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 17957027 - 17957132
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||||||||  ||||| |||||  |  |||||||||||||| | | |||||||||||  |||||||||||||  | |||||| ||||||||    
T  17957027 gttaaatatgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgt 17957126  T
Q  155 aagaat 160  Q
    ||||||    
T  17957127 aagaat 17957132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 19380875 - 19380815
Alignment:
Q  249 tctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaacctg 311  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||    
T  19380875 tctttattctgaaatcagtggatcataaaagagataagaa--atagatctttggtgaaacctg 19380815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 10311678 - 10311740
Alignment:
Q  98 tttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||| ||| |||||||||||| ||||||||||| || ||||||||||| |||||||||||    
T  10311678 tttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaagaat 10311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 19380989 - 19380931
Alignment:
Q  158 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaa 216  Q
    |||||||||||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  19380989 aattgaccaataaaattaccaattaaattattcattcatactaaaattgaaatcaaaaa 19380931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 24672264 - 24672368
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtt 151  Q
    ||||||||||||||||||| | |||| ||| | |  |  ||| |||||||||  ||| |||||||||||| |||||||||||||| | ||||||||| ||    
T  24672264 tgggttaaatatgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatt 24672363  T
Q  152 tgtaa 156  Q
    |||||    
T  24672364 tgtaa 24672368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 6197806 - 6197912
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||||||||| | ||  ||| |||||||||   || |||||||||||| ||| |||||||||| | ||| | |||||||    
T  6197806 gggttaaatatgtttttagtccctataaaatcacaat-tttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagttt 6197904  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  6197905 gtaagaat 6197912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 25043006 - 25042900
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||| ||||| |  |  ||| || ||||||  ||| |||||||||||| |||||||||||||||   ||||||||||||    
T  25043006 gggttaaatatgtttttagtccctacaaaatcatgagttttcaaatttagtc-ctataaaattttaatggtaattttagtcctctgtgatattgtagttt 25042908  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  25042907 gtaagaat 25042900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 3336121 - 3336052
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||||||||   ||| ||||||||| || |||||||||||||||| ||||||||| |||||| ||||    
T  3336121 ttttaagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaat 3336052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 14896834 - 14896875
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  14896834 ttttaagtttagttcctataaaattttaatgataattttagt 14896875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 15691443 - 15691524
Alignment:
Q  79 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    |||||||  |||||||||||||| ||  ||  ||||||||||| ||||||| || ||| |||||||||||||||||| ||||    
T  15691443 aaaattatgaacttttaagtttaattcttattaaattttaatggtaattttggtgctccacaatattgtagtttgtatgaat 15691524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 33518768 - 33518720
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||    
T  33518768 gttaaatatgtttttagtctctataaaattgggatcttttaagtttagt 33518720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 3807321 - 3807263
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||||||||||||||  ||| ||||||| ||||||| |||||||||| ||| ||||    
T  3807321 gttaaatatgtttttagttcctaaaaaattacaaactttcaagtttagttcctacaaaa 3807263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 5644599 - 5644661
Alignment:
Q  51 atgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||||||||||||||||||   |||||||||| ||| ||| ||||||||| |||| ||||    
T  5644599 atgggttaaatatgtttttagtccttataaaattacaaattttcaagtttagtctctataaaa 5644661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 30661198 - 30661148
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||  |||| ||||||||||||  ||||||||||||||||    
T  30661198 gggttaaatatgttcatagtctctataaaattacgaacttttaagtttagt 30661148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 5087068 - 5087117
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||| ||  |||||||||| ||||||| ||||||||||    
T  5087068 ggttaaatatgtttttggttcctataaaattggaaacttctaagtttagt 5087117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 14198673 - 14198632
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||| ||||||||    
T  14198673 ttttaagtttagttcctataaaattttaatgatgattttagt 14198632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 30465327 - 30465223
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||| ||||||||  |||||||||||  |  ||| || ||||| | ||| |||||||||||| ||||||||||  || | ||||||| |||||||    
T  30465327 gttaaatat-tttttagtccctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgt 30465229  T
Q  155 aagaat 160  Q
    ||||||    
T  30465228 aagaat 30465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 4408911 - 4408951
Alignment:
Q  61 tatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    |||||||||||| ||| |||||||| |||||||||||||||    
T  4408911 tatgtttttagtctctgtaaaattacaaacttttaagttta 4408951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 12611793 - 12611897
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||||||||||||  ||| ||||| |  || |||||| |||| |  ||  |||||||||||| |||||||||||||| | || ||| |||||| ||    
T  12611793 ttaaatatgtttttagtccctacaaaatcatgaatttttaaatttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttata 12611892  T
Q  156 agaat 160  Q
    |||||    
T  12611893 agaat 12611897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 34187721 - 34187673
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||  ||| ||||||| ||| |||||||||||||    
T  34187721 gttaaatatgtttttagtccctacaaaattacaaatttttaagtttagt 34187673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 54 - 156
Target Start/End: Original strand, 25067648 - 25067750
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttg 153  Q
    ||||||||||||||||| | |||| ||||| | ||| |||||||||| ||||||| |||||||||||| |||||||| ||||| | |||||| |||||||    
T  25067648 ggttaaatatgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttg 25067747  T
Q  154 taa 156  Q
    |||    
T  25067748 taa 25067750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 34471227 - 34471330
Alignment:
Q  62 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaagaatt 161  Q
    |||||||||||  ||| ||||| | || ||||||||||||||  ||| |||||||||||| |||||||||||||| | ||||||||||||||||| |||     
T  34471227 atgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaataata 34471326  T
Q  162 gacc 165  Q
    ||||    
T  34471327 gacc 34471330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 9332749 - 9332814
Alignment:
Q  161 tgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtgt 227  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  9332749 tgaccaataaaatcaccaactaaatcatccattcatactgaaattgaaatt-aaaaataagaagtgt 9332814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 9332847 - 9332942
Alignment:
Q  229 aaatggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaaa-cctgtcatgtttcc 321  Q
    ||||||| ||||||||| |  |||||||||||||||||| ||||| ||||||||||||| |||||| ||| || ||||||| ||||||||||||||    
T  9332847 aaatggaagaaatgtatttttctctttgttctgaaatcaatggatgataaaagagataataaatattgatatttggtgaaaccctgtcatgtttcc 9332942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 13009480 - 13009431
Alignment:
Q  111 aaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 160  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaat 13009431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Original strand, 20132051 - 20132156
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||||||||||||  ||||| |||||  |  |||||||||||||||| | |||||||||||  |||||||||||||  | |||||| || |||||    
T  20132051 gttaaatatgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgt 20132150  T
Q  155 aagaat 160  Q
    ||||||    
T  20132151 aagaat 20132156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 39596920 - 39596814
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctaga----aaattttaatgataattttagtcctctacaatattgtag 149  Q
    ||||||||||||||||| |   ||||||||||  |  |||||||||||||||||| |    || ||||||||||||||||||||||| | ||||||||||    
T  39596920 ggttaaatatgtttttaatccttataaaattacgagtttttaagtttagtttctatatataaatttttaatgataattttagtcctccaaaatattgtag 39596821  T
Q  150 tttgtaa 156  Q
    |||||||    
T  39596820 tttgtaa 39596814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 11297753 - 11297856
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    |||||||||||||||||| |  ||| ||||| |  |  ||||||| |||||| |||  ||||||||||| |||||||||||||| | |||||| ||||||    
T  11297753 gggttaaatatgtttttattccctacaaaataatgagtttttaagcttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagttt 11297852  T
Q  153 gtaa 156  Q
    ||||    
T  11297853 gtaa 11297856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 27567839 - 27567732
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||| ||||||||  ||| ||||| |  |  ||| ||||||| |  ||| |||||||||||| |||||||||||||  | |||||||||||||    
T  27567839 gggttaaatatatttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtagttt 27567740  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  27567739 gtaagaat 27567732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 10463171 - 10463221
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||||||    
T  10463171 gggttaaatatgtttttagtctctgtaaaatttgaaacttctaagtttagt 10463221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 487
Target Start/End: Original strand, 9333003 - 9333064
Alignment:
Q  426 tcctcaattctcaatagcaattggcaaatatagatagagaacctgtcataaatcagttactt 487  Q
    ||||||||||||| |||||||| |||||||||||||||  | ||| |||| |||||||||||    
T  9333003 tcctcaattctcattagcaattagcaaatatagatagaataactgccatagatcagttactt 9333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 12925246 - 12925287
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  12925246 ttttaagtttagttcctataaaattttaatgataattttagt 12925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 27273015 - 27273072
Alignment:
Q  308 cctgtcatgtttcc-tctctatctttggatgaaatgtctcttgcaattgtaatttgga 364  Q
    |||||||||||| | ||| ||||| ||||||||| |||||||||||||||||||||||    
T  27273015 cctgtcatgttttcgtctttatctgtggatgaaacgtctcttgcaattgtaatttgga 27273072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 38487341 - 38487418
Alignment:
Q  79 aaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    ||||||| ||| ||||||||||||| | || |||||||||||| |||||||| || | || |||||| ||||||||||    
T  38487341 aaaattacaaatttttaagtttagtctttataaaattttaatggtaattttaatcatttataatattatagtttgtaa 38487418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 40751801 - 40751697
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||| |||||| | | || ||||||| ||  ||| |||||||||| ||| |||||||||||| ||||| | |||||  | |||||| |||||||||    
T  40751801 ttaaatatatttttaatctgtacaaaattataagttttcaagtttagttcctataaaattttaatgctaattattgtccttcataatattttagtttgta 40751702  T
Q  156 agaat 160  Q
    |||||    
T  40751701 agaat 40751697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 6588569 - 6588620
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtt 104  Q
    ||||||||||||||||||||  |||||||||| | | |||||||||||||||    
T  6588569 gggttaaatatgtttttagtccctataaaattgggaccttttaagtttagtt 6588620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 21367162 - 21367257
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatatt 145  Q
    |||| |||||||||||||||||   |||||||||||  |  |||||| |||||| | || |||||||||||| |||||||| ||||| | ||||||    
T  21367162 aatgtgttaaatatgtttttagcccctataaaattatgagtttttaaatttagtctttataaaattttaatggtaattttaatcctccataatatt 21367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 7238990 - 7238940
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||| ||| ||||||||||||||    
T  7238990 gggttaaatatgtttttggttcctataaaattggaatcttttaagtttagt 7238940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 13009269 - 13009322
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||| ||||||||  ||||||||||| || |||| |||||||||    
T  13009269 aatgggttaaatatatttttagtccctataaaattacaagctttcaagtttagt 13009322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 30851806 - 30851702
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgt 154  Q
    ||||||||| ||||||||  |||||||||||  |  ||| || ||||| | ||| |||||||||||| ||||||||||  || | ||||||| |||||||    
T  30851806 gttaaatat-tttttagttcctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgt 30851708  T
Q  155 aagaat 160  Q
    ||||||    
T  30851707 aagaat 30851702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 2316119 - 2316155
Alignment:
Q  110 aaaattttaatgataattttagtcctctacaatattg 146  Q
    ||||||||||||||||||||||||||| | |||||||    
T  2316119 aaaattttaatgataattttagtcctccataatattg 2316155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 9333879 - 9333946
Alignment:
Q  158 aattgaccaataaaatcacaaactaaattatccattcatactaaaattgaaattaaaaaataagaagtg 226  Q
    |||||| |||||||||||| |||||||||||||  ||| ||| | ||||||| |||||||||| |||||    
T  9333879 aattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaa-taaaaaataaaaagtg 9333946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 5509 - 5432
Alignment:
Q  231 atggatgaaatgtatct--ctctttgttctgaaatcattggatcataaaagagataagaaatatagatcttcggtgaa 306  Q
    |||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  5509 atggatgaaatgtatctttctctatgttctgaaatcaatggatgataaaagagataagaaatatagatgtttggtgaa 5432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 5584 - 5547
Alignment:
Q  179 actaaattatccattcatactaaaattgaaattaaaaa 216  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  5584 actaaataatccattcatactgaaattgaaattaaaaa 5547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 160
Target Start/End: Complemental strand, 152340 - 152236
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgta 155  Q
    |||||||||||| ||||  |||||||||||  || ||| ||||||||| | || |||||||||||| |||||||||||||  | |||||||||| |||||    
T  152340 ttaaatatgtttgtagtccctataaaattatgaattttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgta 152241  T
Q  156 agaat 160  Q
    |||||    
T  152240 agaat 152236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 20985920 - 20986030
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtag 149  Q
    ||||||||| ||||||||||| |  ||| ||||| |  |  |||||| ||||||  ||| |||||||||||| ||||||||||| |||| ||||||||||    
T  20985920 aatgggttagatatgtttttaattcctacaaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtag 20986019  T
Q  150 tttgtaagaat 160  Q
    |||| ||||||    
T  20986020 tttgcaagaat 20986030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 26020272 - 26020325
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||    
T  26020272 aatgggttaaatatgtttttagtttttataaaattggaaacttctaagtttagt 26020325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 13393072 - 13393010
Alignment:
Q  50 aatgggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaa 113  Q
    ||||||||||||||||||||||| ||||| |||||| ||  |||||||||||||||||| ||||    
T  13393072 aatgggttaaatatgtttttagtttctat-aaattacaagtttttaagtttagtttctacaaaa 13393010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 33753132 - 33753026
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||||||||||||  ||| ||||| | ||  ||| |||||||||   || |||||||||||| | ||||||| |||| | |||||||||||||    
T  33753132 gggttaaatatgtttttagtc-ctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtagttt 33753034  T
Q  153 gtaagaat 160  Q
    ||||||||    
T  33753033 gtaagaat 33753026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 5430439 - 5430487
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    ||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  5430439 gggttaaatatatttttagtctctataaaattggagacttttaagttta 5430487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 48410561 - 48410514
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||| ||  |||||||||| ||||||||||||||||||    
T  48410561 ttaaatatgtttttggtccctataaaatttgaaacttttaagtttagt 48410514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 28701336 - 28701286
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||| ||||  ||||||||||||  ||||||||||||||||    
T  28701336 gggttaaatatgttcttagactctataaaattacgaacttttaagtttagt 28701286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 13392847 - 13392908
Alignment:
Q  95 aagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaa 156  Q
    |||||||||  ||| ||| |||||||| ||||||||||| || | |||||||||||||||||    
T  13392847 aagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaa 13392908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 16545544 - 16545483
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagttt 152  Q
    ||||||||||| |  ||| |||||||||||||||| |||| ||||| | |||||||||||||    
T  16545544 ttttaagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt 16545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 43504656 - 43504705
Alignment:
Q  52 tgggttaaatatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    |||||||||||||||||| ||   ||||||||||||| ||||||||||||    
T  43504656 tgggttaaatatgtttttggttcttataaaattagaatcttttaagttta 43504705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 50919449 - 50919373
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtc 133  Q
    |||||||||||||||||   || ||||| | ||| |||||||||||||  ||| |||||||||||| |||||||||||    
T  50919449 ttaaatatgtttttagtccttacaaaatcataaa-ttttaagtttagtccctataaaattttaatggtaattttagtc 50919373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 23230791 - 23230855
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaatttt 117  Q
    |||||||||||||||||||| |||| ||||||| ||| ||  |||||||||  ||| ||||||||    
T  23230791 gggttaaatatgtttttagtctctacaaaattacaaatttacaagtttagtccctacaaaatttt 23230855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 33707244 - 33707292
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagttta 101  Q
    ||||||||||||||||| ||  ||||||||||  |||||||||||||||    
T  33707244 gggttaaatatgtttttggttcctataaaattgaaaacttttaagttta 33707292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 253909 - 253814
Alignment:
Q  62 atgtttttagtatctataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgtagtttgtaag 157  Q
    ||||||||| |  |||||||||||  |  ||||||||||||||  || |||||||||||  ||||||||||||| || |||||| |||||||||||    
T  253909 atgtttttaattcctataaaattatgagtttttaagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaag 253814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 33600 - 33559
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33600 ttttaagtttagttcctataaaattttaatgataattttagt 33559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 363207 - 363166
Alignment:
Q  91 ttttaagtttagtttctagaaaattttaatgataattttagt 132  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  363207 ttttaagtttagttcctataaaattttaatgataattttagt 363166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 7312 - 7264
Alignment:
Q  55 gttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||||||||||||||| ||||||||||| | | ||||||||||||||    
T  7312 gttaaatatgtttttagtctctataaaattgggatcttttaagtttagt 7264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 3875 - 3946
Alignment:
Q  77 ataaaattagaaacttttaagtttagtttctagaaaattttaatgataattttagtcctctacaatattgta 148  Q
    ||||||||| ||  ||||||||||||| |||  ||| |||||||||||||||||||| | || |||||||||    
T  3875 ataaaattacaagtttttaagtttagtctctctaaacttttaatgataattttagtcatttataatattgta 3946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 16832 - 16882
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||||||  |||||||||||  |||||| |||||||||    
T  16832 gggttaaatatgtttttagtccctataaaattaccaactttcaagtttagt 16882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 123552 - 123502
Alignment:
Q  53 gggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    ||||||||||||||||| ||  |||||||||| ||| ||||||||||||||    
T  123552 gggttaaatatgtttttggtccctataaaattggaaccttttaagtttagt 123502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 27063 - 27112
Alignment:
Q  54 ggttaaatatgtttttagtatctataaaattagaaacttttaagtttagt 103  Q
    |||||| |||||||||||| ||||||||||| | | ||||||||||||||    
T  27063 ggttaattatgtttttagtctctataaaattcggaccttttaagtttagt 27112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 1553 - 1505
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtt 104  Q
    |||||||||||| ||||  ||| ||||||| ||||||||||||||||||    
T  1553 ttaaatatgtttatagtccctacaaaattataaacttttaagtttagtt 1505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 8019 - 7971
Alignment:
Q  56 ttaaatatgtttttagtatctataaaattagaaacttttaagtttagtt 104  Q
    |||||||||||| ||||  ||| ||||||| ||||||||||||||||||    
T  8019 ttaaatatgtttatagtccctacaaaattataaacttttaagtttagtt 7971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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