View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_low_5 (Length: 476)
Name: NF17884_low_5
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Complemental strand, 6909948 - 6909488
Alignment:
| Q |
15 |
caaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcacactca |
114 |
Q |
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| T |
6909948 |
caaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatgcaaaaatgtgcaagtaaccatcaactttttcatcccactca |
6909849 |
T |
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| Q |
115 |
caattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatt |
214 |
Q |
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| T |
6909848 |
caattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatgttgaatttatccactcaaaattttaaagagttaaacatatt |
6909749 |
T |
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| Q |
215 |
tttagttcgtataaaattataataagttgtttttagtatctgtacaaattttcttcaaattttagattttacaaaattatattgtaaatagtttaagtct |
314 |
Q |
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| T |
6909748 |
tttagttcttataaaattataataagttgtttttagtatctgtacaaattttcttcaaattttaaattttacaaaattatattgtaaatagtttaagtct |
6909649 |
T |
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| Q |
315 |
ctcctgaaataagatgttcaattatcattcaacttttaaagttttgaatgannnnnnnnnngtcgtgtttaaaatatttcttcacataaaaataatatga |
414 |
Q |
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| T |
6909648 |
ctcctgaaataagatgttcaattatcattcaacttttaaatttttgaatga-attttttttgtcgtgtttaaaatatttcttcacataaaaataatatga |
6909550 |
T |
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| Q |
415 |
atctttcaaacgtcaaaagctctaaagaaaagcaacaaaatttggacatagaaattaatttt |
476 |
Q |
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| T |
6909549 |
atcttccaaacatcaaaagctctaaagaaaagcaacaaaatttggacatagaaactaatttt |
6909488 |
T |
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