View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_low_6 (Length: 399)
Name: NF17884_low_6
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 10616410 - 10616788
Alignment:
| Q |
1 |
cataataataataatagcttcnnnnnnnttcaagaaacttggaagtatttcaatccacaaatcttcctacaaaattgaaatcaacaacaaaactagcaca |
100 |
Q |
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| T |
10616410 |
cataataataataatagcttcaaaaaaattcaagaaacttggaaatatttcaatccacaaatcttcctacaaaattgaaatcaacaacaaaactagcaca |
10616509 |
T |
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| Q |
101 |
tgattaaatctataaacaaaatcgcaaacattcattatcatttctccttcattataataaataaaaatgattcctcttcagaactaattaaaagctacaa |
200 |
Q |
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| T |
10616510 |
tgattaaatctataaacaaaatcgcaaacattcattatcatttctccttcattataataaataaaaatgattcctcttcagaactaattaaaagctacaa |
10616609 |
T |
|
| Q |
201 |
agtatgaagaactgaattaatcaaaattcagaattaacactacttataaattatcataaataatttnnnnnnnnnnnnnnnnnncctgataataacacta |
300 |
Q |
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| T |
10616610 |
agtatgaagaactgaattaatcaaaattcagaattaacactacttataaattatcataaataattt-----aaaaaaaaaaaaacctgataataacacta |
10616704 |
T |
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| Q |
301 |
ccaaatcaagttaagcttatcttcaaagggtttcaaggagatgtgaaaatcgtagatgaacacgaagacggagagtgtgataac |
384 |
Q |
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| T |
10616705 |
ccaaatcaagttaagcttatcttcaaagggtttcaaggagatgtgaaaatcgtagatgaacacgaagacggagagtgtgataac |
10616788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 13468863 - 13468782
Alignment:
| Q |
171 |
ttcctcttcagaactaattaaaagctacaaagtatgaagaactgaattaatcaaaattcagaattaa-cactacttataaat |
251 |
Q |
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| T |
13468863 |
ttcctcatcataattaattaaaagctacaaaatatgaagaactaaattaatcaaaattcagaattaatcactacttataaat |
13468782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 13468944 - 13468890
Alignment:
| Q |
69 |
acaaaattgaaatcaacaacaaaactagcacatgattaaatctataaacaaaatc |
123 |
Q |
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| T |
13468944 |
acaaaattgaaatcaacaacaatactagcacatgattaaatctataaacaaaatc |
13468890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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