View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_low_8 (Length: 286)
Name: NF17884_low_8
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 20217924 - 20217663
Alignment:
| Q |
8 |
cgaagaatattaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagataatttacgttctcttat |
107 |
Q |
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| T |
20217924 |
cgaaaaatactaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagatgatttacgtgctcttat |
20217825 |
T |
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| Q |
108 |
ttttaatgtcattgcaggttcattattccaagcaagggcaattgtttaagtcacaagttcagagtatgcacaaggaaattcttcaaagtccgtggctctg |
207 |
Q |
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| T |
20217824 |
ttttaatgtcattgcaggttcattattccaagcaagggcaattgtttaagtcacaagttcagagtatgcacaaggaaattcttcaaagtccgtggctctg |
20217725 |
T |
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| Q |
208 |
tgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
269 |
Q |
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| T |
20217724 |
tgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
20217663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 20173198 - 20173098
Alignment:
| Q |
8 |
cgaagaatattaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagataatttacgttctcttat |
107 |
Q |
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| T |
20173198 |
cgaaaaatactaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagatgatttacgtgctcttat |
20173099 |
T |
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| Q |
108 |
t |
108 |
Q |
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| T |
20173098 |
t |
20173098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 20237326 - 20237261
Alignment:
| Q |
204 |
tctgtgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
269 |
Q |
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| T |
20237326 |
tctgtgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
20237261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 44302436 - 44302175
Alignment:
| Q |
8 |
cgaagaatattaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagataatttacgttctcttat |
107 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
44302436 |
cgaaaaatactaaagaagtatgataaggtatgataaataaataaatgttagaataatttggtgcgctagttttaagtttagatgatttacgtgctcttat |
44302337 |
T |
|
| Q |
108 |
ttttaatgtcattgcaggttcattattccaagcaagggcaattgtttaagtcacaagttcagagtatgcacaaggaaattcttcaaagtccgtggctctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302336 |
ttttaatgtcattgcaggttcattattccaagcaagggcaattgtttaagtcacaagttcagagtatgcacaaggaaattcttcaaagtccgtggctctg |
44302237 |
T |
|
| Q |
208 |
tgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302236 |
tgaacttatggcattccacatcaatttaagagaaaccaaggtcaattcaaggaaggaaactg |
44302175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 39653858 - 39653942
Alignment:
| Q |
120 |
tgcaggttcattattccaagcaagggcaattgtttaagtcacaagttcagagtatgcacaaggaaattcttcaaagtccgtggct |
204 |
Q |
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||||| |||||||||| |||||||||||||| || |||||||||| |||| ||||||||||||||||||||| ||||| ||||| |
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| T |
39653858 |
tgcagattcattattctaagcaagggcaattattcaagtcacaagcccagactatgcacaaggaaattcttcagagtccctggct |
39653942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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