View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17884_low_9 (Length: 266)
Name: NF17884_low_9
Description: NF17884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17884_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 47167700 - 47167920
Alignment:
| Q |
24 |
ctttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcggtaaccagatgtgaatttttggtatgcctaccttttttcgcttac |
123 |
Q |
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| T |
47167700 |
ctttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcagtaaccagatgtgaacttttggtatgcctaccttttttcgcttac |
47167799 |
T |
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| Q |
124 |
aaaagaattggctgttttattcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttg |
223 |
Q |
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| T |
47167800 |
aaaagaattggctgttttattcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttg |
47167899 |
T |
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| Q |
224 |
ttcctgacttcttcaatggcg |
244 |
Q |
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| T |
47167900 |
ttcctgatttcttcaatggcg |
47167920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 48714552 - 48714687
Alignment:
| Q |
106 |
ctaccttttttcgcttacaaaagaattggctgttttattccct-tggtttacattttgttgatctgttt-gtgaaggatgtttgcagacaaggttgcagc |
203 |
Q |
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| T |
48714552 |
ctaccttttttcacttgtaaaagaatcggttgtttcattccttctggtttacatttcgttgaattgttttgtgaaggatgtttgccgacaaggttgcagc |
48714651 |
T |
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| Q |
204 |
aactgggtattatgtggttgttcctgacttcttcaa |
239 |
Q |
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| T |
48714652 |
aaccgggtattatgtggtggttcccgacttcttcaa |
48714687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 48696713 - 48696812
Alignment:
| Q |
143 |
ttcccttggtttacattttgttgatctgtttgtgaaggatgtttgcagacaaggttgcagcaactgggtattatgtggttgttcctgacttcttcaatgg |
242 |
Q |
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| T |
48696713 |
ttcccctggtttacattttgttgatctgtttgtgaaggaatcttgccgacaaggttgcggcagcaggttattatgtggtagttcctgactacttctatgg |
48696812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 46930475 - 46930540
Alignment:
| Q |
25 |
tttttcaagaatttgagtatctgtgaatgatggaaataaatcaaattcttttcggtaaccagatgt |
90 |
Q |
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| T |
46930475 |
ttttttaagaatttgagcatctgtggatgatggaaataaatcaaattcttttcagtaactagatgt |
46930540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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