View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_high_12 (Length: 294)
Name: NF17885_high_12
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 45928140 - 45927866
Alignment:
| Q |
1 |
ttataaatcgcaaaacacctcaagcataattttgagccttattctagtttgtgtattaaaatgaaaagataaaataatatcatgctgggatttgtactat |
100 |
Q |
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| T |
45928140 |
ttataaatcgcaaaacacctcaagcataattttgagccttattctagtttgt--attaaaatgaaaagataaaataatatcatgctgggatttgtactat |
45928043 |
T |
|
| Q |
101 |
tgaatatttgaatgaatgaattcacaagacagtcatcataaccagcttgtagacaaataagaagtaacataccaccttcaaaatattgaagaattgcgat |
200 |
Q |
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| T |
45928042 |
tgaatatttgaatgaatgaattcacaagacagtcatcataaccagcttgtagacaaataagaagtaacataccaccttcaaaatattgaagaattgcgat |
45927943 |
T |
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| Q |
201 |
aaattcaaattattcactttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccactcacattt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45927942 |
aaattcaaattattcactttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccactcacattt |
45927866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 15807034 - 15806983
Alignment:
| Q |
218 |
tttaccctttcgagtttgtgcaacaggttagtcttgaattcacgaacaccac |
269 |
Q |
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|||||| |||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
15807034 |
tttaccttttcgagtttgtgcaataggtaagtcttgaattgacgaacaccac |
15806983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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