View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17885_high_18 (Length: 248)

Name: NF17885_high_18
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17885_high_18
NF17885_high_18
[»] scaffold0006 (4 HSPs)
scaffold0006 (16-144)||(64555-64683)
scaffold0006 (169-227)||(64469-64527)
scaffold0006 (37-130)||(152017-152110)
scaffold0006 (175-227)||(151958-152009)
[»] chr4 (8 HSPs)
chr4 (16-144)||(1944717-1944845)
chr4 (50-144)||(15650645-15650739)
chr4 (37-124)||(3839248-3839335)
chr4 (169-227)||(1944873-1944931)
chr4 (37-129)||(26870166-26870259)
chr4 (169-227)||(15650560-15650618)
chr4 (169-227)||(3839171-3839229)
chr4 (169-227)||(26870105-26870163)
[»] chr2 (12 HSPs)
chr2 (16-144)||(10821127-10821255)
chr2 (37-130)||(14753445-14753538)
chr2 (37-130)||(17025927-17026021)
chr2 (37-130)||(17092112-17092206)
chr2 (169-227)||(10821048-10821106)
chr2 (169-227)||(17026024-17026082)
chr2 (37-130)||(16884059-16884152)
chr2 (37-130)||(17041749-17041842)
chr2 (169-224)||(17092209-17092264)
chr2 (169-231)||(16884155-16884217)
chr2 (169-231)||(17041845-17041907)
chr2 (169-227)||(14753540-14753598)
[»] chr5 (11 HSPs)
chr5 (48-227)||(9809896-9810072)
chr5 (48-227)||(7863602-7863780)
chr5 (48-227)||(12702136-12702313)
chr5 (48-144)||(12763232-12763329)
chr5 (37-119)||(3210071-3210153)
chr5 (37-130)||(290742-290835)
chr5 (37-130)||(9702518-9702612)
chr5 (169-227)||(12763152-12763210)
chr5 (169-227)||(3209999-3210057)
chr5 (177-227)||(290845-290895)
chr5 (169-227)||(9702616-9702674)
[»] chr3 (14 HSPs)
chr3 (48-227)||(26035889-26036064)
chr3 (37-130)||(35437067-35437160)
chr3 (37-129)||(11383411-11383503)
chr3 (37-123)||(12157851-12157937)
chr3 (37-130)||(16496189-16496282)
chr3 (41-130)||(36164965-36165054)
chr3 (37-130)||(54792827-54792920)
chr3 (48-144)||(15315424-15315520)
chr3 (169-227)||(35437162-35437220)
chr3 (169-231)||(36164901-36164963)
chr3 (169-227)||(12157785-12157843)
chr3 (175-227)||(16496290-16496341)
chr3 (173-227)||(54792768-54792821)
chr3 (170-218)||(15315353-15315401)
[»] chr6 (8 HSPs)
chr6 (48-227)||(8614872-8615051)
chr6 (48-144)||(5753262-5753358)
chr6 (48-144)||(33318824-33318920)
chr6 (37-130)||(1932151-1932244)
chr6 (169-227)||(4425815-4425873)
chr6 (37-130)||(4425720-4425813)
chr6 (169-227)||(1932247-1932305)
chr6 (169-227)||(33318959-33319017)
[»] chr7 (12 HSPs)
chr7 (37-130)||(9226157-9226250)
chr7 (48-144)||(34130539-34130635)
chr7 (37-130)||(38434415-38434509)
chr7 (170-227)||(42244657-42244714)
chr7 (37-139)||(42244713-42244815)
chr7 (37-129)||(42996752-42996845)
chr7 (169-227)||(9226097-9226155)
chr7 (169-227)||(38434354-38434412)
chr7 (169-227)||(42996848-42996906)
chr7 (37-100)||(4481283-4481346)
chr7 (38-116)||(19123052-19123129)
chr7 (38-122)||(19124047-19124131)
[»] scaffold0249 (2 HSPs)
scaffold0249 (48-144)||(25082-25178)
scaffold0249 (169-227)||(24994-25052)
[»] chr8 (14 HSPs)
chr8 (50-144)||(2961168-2961262)
chr8 (37-130)||(39204675-39204768)
chr8 (37-132)||(29434083-29434178)
chr8 (37-129)||(39445065-39445158)
chr8 (169-227)||(2961083-2961141)
chr8 (37-130)||(23626193-23626287)
chr8 (169-231)||(39204771-39204833)
chr8 (37-129)||(12250049-12250142)
chr8 (169-227)||(12249988-12250046)
chr8 (169-227)||(23626132-23626190)
chr8 (169-227)||(29434181-29434239)
chr8 (169-227)||(39445161-39445219)
chr8 (37-130)||(41907822-41907915)
chr8 (169-227)||(41907917-41907975)
[»] scaffold0051 (2 HSPs)
scaffold0051 (37-130)||(61525-61618)
scaffold0051 (169-227)||(61620-61678)
[»] chr1 (10 HSPs)
chr1 (37-130)||(12714785-12714878)
chr1 (37-130)||(28631620-28631714)
chr1 (37-130)||(13662255-13662348)
chr1 (37-130)||(28565565-28565658)
chr1 (169-227)||(15317553-15317611)
chr1 (173-227)||(28565506-28565559)
chr1 (169-227)||(28631718-28631776)
chr1 (69-130)||(15317490-15317551)
chr1 (173-227)||(12714884-12714937)
chr1 (175-227)||(13662196-13662247)
[»] scaffold0376 (2 HSPs)
scaffold0376 (48-144)||(10945-11041)
scaffold0376 (169-227)||(10857-10915)
[»] scaffold0088 (2 HSPs)
scaffold0088 (37-129)||(52830-52923)
scaffold0088 (169-227)||(52769-52827)


Alignment Details
Target: scaffold0006 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 64683 - 64555
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  64683 atagaacatgctcttttcctacttgattttcacatttatgaacgacaacaatttcttagaaaaatgcggctatttgccttaatttgctcatttctccttt 64584  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  64583 ataacaaagatttttctattttaatccct 64555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 64527 - 64469
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64527 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 64469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 152110 - 152017
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  152110 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 152017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 152009 - 151958
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  152009 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 151958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 1944717 - 1944845
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  1944717 atagaacatgctcttttcctacttgattttcacatttatgaacgacaacaatttcttagaaaaatgcggctatttgccttaatttgctcatttctccttt 1944816  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  1944817 ataacaaagatttttctattttaatccct 1944845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 15650739 - 15650645
Alignment:
Q  50 tttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||| ||||||||| ||||||||   ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15650739 tttatgaacgacaacaatttcttaaaaaaatgcagctatttcccttaatttgctcatttcttctttataacaaagatttttctattttaatccct 15650645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 3839335 - 3839248
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaag 124  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||   ||||| |||||||||||||||||||||||||||||||||    
T  3839335 cttgattttcacatttatgaacaacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaag 3839248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1944873 - 1944931
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1944873 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 1944931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 26870259 - 26870166
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  26870259 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 26870166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 15650618 - 15650560
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15650618 aaaatacagtaaaagtgatttatttagaatatccgagtttgttcaatattcattaattt 15650560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 3839229 - 3839171
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  3839229 aaaatacagtaaaagtgatttatttagaatatccaagtttgtgcaatatttattaattt 3839171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 26870163 - 26870105
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  26870163 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 26870105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 10821255 - 10821127
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||   ||||| ||||||||||||||||||||||||    
T  10821255 atagaacatgttcttttcctacttgattttcacatttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctccttt 10821156  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  10821155 ataacaaagatttttctattttaatccct 10821127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 14753445 - 14753538
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  14753445 cttgattttaacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 14753538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17025927 - 17026021
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  17025927 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagnttttt 17026021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17092112 - 17092206
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  17092112 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 17092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 10821106 - 10821048
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  10821106 aaaatacagtaaaagtgatttatttagaatatccaagtttgttcaatattcattaattt 10821048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 17026024 - 17026082
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  17026024 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 17026082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 16884059 - 16884152
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||||  || |||||||||||||||||    ||||| |||||| || ||||| ||||||||||||||||| |||||    
T  16884059 cttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaagttactcatctctcctttataacaaagtttttt 16884152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17041749 - 17041842
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||||  || |||||||||||||||||    ||||| |||||| || ||||| ||||||||||||||||| |||||    
T  17041749 cttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaagttactcatctctcctttataacaaagtttttt 17041842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 17092209 - 17092264
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaa 224  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  17092209 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaa 17092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 16884155 - 16884217
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||| ||||    
T  16884155 aaaatacagtaaaagtgatttatttagaatatccgagttaatgcaacattcattaattaactc 16884217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 17041845 - 17041907
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||| ||||    
T  17041845 aaaatacagtaaaagtgatttatttagaatatccgagttaatgcaacattcattaattaactc 17041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 14753540 - 14753598
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||| | | ||||||||||||||||||||||    
T  14753540 aaaatatagtaaaagtgatttatttagaatattcaaatttgtgcaatattcattaattt 14753598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 9810072 - 9809896
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9810072 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 9809973  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9809972 aaaaa---aaagttttttttttaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 9809896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 7863780 - 7863602
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||  |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7863780 catttatgaacgacagcaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccct-aa 7863682  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
           |||||          ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7863681 aaaaaaacaaagttttttttttaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 7863602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 12702313 - 12702136
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  12702313 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 12702214  T
Q  148 nnnnnnncaaag--nnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12702213 aaaa----aaagtttttttttttaaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 12702136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 12763329 - 12763232
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaattt-gctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12763329 catttatgaacgacaacaatttcttagaaaaatgcagctatttcccttaattttgctcatttctcctttataacaaagatttttctattttaatccct 12763232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 3210153 - 3210071
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataa 119  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  3210153 cttgattttcacatttatgaacgacaacaatttcttaggaaaatgcaattatttcccttaatttgctcatttctcctttataa 3210071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 290742 - 290835
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||  ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  290742 cttgattttcacatttatgaacggcatcaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 290835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 9702518 - 9702612
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctt-agaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||   ||||| | ||||||||||||||||| ||||||||||||| |||||    
T  9702518 cttgattttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcctttaatttgctcatttcttctttataacaaagtttttt 9702612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12763210 - 12763152
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12763210 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 12763152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 3210057 - 3209999
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3210057 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgaaatattcattaattt 3209999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 290845 - 290895
Alignment:
Q  177 gtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  290845 gtaaaagtgatttatttagaatatccaagtttgtgcaatattcattaattt 290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 9702616 - 9702674
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  9702616 aaaatacaataaaaatgattcatttataatatccgagtttgtgcaatattcattaattt 9702674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 26036064 - 26035889
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    ||||||||||||| || |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  26036064 catttatgaacgaaaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 26035965  T
Q  148 nnnnnnncaaag-nnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||          |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  26035964 aaa-----aaagttttttttttaaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatatttattaattt 26035889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 35437067 - 35437160
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||   ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  35437067 cttgattttcacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttttcctttataacaaagtttttt 35437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 11383411 - 11383503
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||| ||||| ||||||||||| |  |||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  11383411 cttgattttcacatttatgaaggacaacaatttcttagagaggtgcagttatttcccttaatttgctcatttctcctttataacaaagatttt 11383503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 12157937 - 12157851
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaa 123  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||  |||||| | ||||||||||||||||||||||||||||||    
T  12157937 cttgattttcacatttaggaacgacaacaatttcttagaaagatgcagttatttcctttaatttgctcatttctcctttataacaaa 12157851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 16496189 - 16496282
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  16496189 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 16496282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 36165054 - 36164965
Alignment:
Q  41 attttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  36165054 attttcacatttatgaacgacaacaattttttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 36164965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 54792920 - 54792827
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| |||||||||||||||||||| |||||||||||| |||||    
T  54792920 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcttttataacaaagtttttt 54792827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 15315520 - 15315424
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||  |||||||||| |||||||   |||||  ||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  15315520 catttatgaacgacagcaatttcttaggaaaatgcagctatttctctttatttgctcagttcttctttataacaaagatttttctattttaatccct 15315424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 35437162 - 35437220
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  35437162 aaaatatagtaaaaatgatttatttagaatatccgagtttgtgcaatattcattaattt 35437220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 36164963 - 36164901
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||| ||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||    
T  36164963 aaaatatagtaaaagtgatttatttaaaaaatccgagtttgtgcaatattaattaatttactc 36164901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12157843 - 12157785
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||||  |||||| |||||||||||||||||    
T  12157843 aaaatatagtaaaagtgatttatttagaatatcatagtttgagcaatattcattaattt 12157785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 16496290 - 16496341
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  16496290 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 16496341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 54792821 - 54792768
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||| |||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  54792821 tacattaaaagtgattt-tttagaatatccgaatttgtgcaatattcattaattt 54792768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 15315401 - 15315353
Alignment:
Q  170 aaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatatt 218  Q
    |||||| | |||||||||| ||||||||||| |||||||||||||||||    
T  15315401 aaatactggaaaagtgatttatttagaatattcgagtttgtgcaatatt 15315353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 8614872 - 8615051
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||  |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  8614872 catttatgaacgacagcaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 8614971  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||            ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8614972 aaaaaacaaagtttttttttttaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 8615051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 5753358 - 5753262
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  5753358 catttatgaacgacaacaatttcttaggaaaatgcagctattttccttaattttctcaattctcctttataacaaagatttttctattttaatccct 5753262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 33318824 - 33318920
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||  |||||||   ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33318824 catttatgaacgacaacaatttcttaagaaaatgcagctatttcccttaatttgttcatttctcctttataacaaagatttttctattttaatccct 33318920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 1932151 - 1932244
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||   |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  1932151 cttgattttcacatttatgaacgacaacaatttcttagaaagatgtagttattttccttaatttgctcatttcttctttataacaaagtttttt 1932244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 4425815 - 4425873
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4425815 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 4425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 4425720 - 4425813
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||| |||| ||||||||| ||| ||||   ||||| | |||||||| |||||||||||||||||||||| |||||    
T  4425720 cttgattttcacatttatgaacaacaacaatttcttaaaaagatgcagctattttcgttaatttgttcatttctcctttataacaaagtttttt 4425813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1932247 - 1932305
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  1932247 aaaatatagtaacagtgatttatttagaatatccgagtttgtgcaatattcattaattt 1932305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 33318959 - 33319017
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  33318959 aaaatgcagtaaaagtggtttatttagaatattcgagtttgtgcaatattcattaattt 33319017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 9226250 - 9226157
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  9226250 cttgattttcacatttatgaacgacaacaatttcttagaaagatgcagttatttcccttaatttgctcatttctcctttataacaaagtttttt 9226157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 34130539 - 34130635
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34130539 catttatgaacgacaacaatttcttaggaaaatgcagctatttttcttaatttgctcatttctcctttataacaaagatttttctattttaatccct 34130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 38434509 - 38434415
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  38434509 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 38434415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 42244714 - 42244657
Alignment:
Q  170 aaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42244714 aaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 42244657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 42244815 - 42244713
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattt 136  Q
    ||||||||||||||||||||| ||||  ||||||||||||| |||    ||||| |||||||||||||||||||||||||||| |||| ||||| | |||    
T  42244815 cttgattttcacatttatgaatgacagcaatttcttagaaagatgtagctattttccttaatttgctcatttctcctttataataaagtttttttttttt 42244716  T
Q  137 taa 139  Q
    |||    
T  42244715 taa 42244713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 42996752 - 42996845
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||| ||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  42996752 cttgattttgacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 42996845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 9226155 - 9226097
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  9226155 aaaatatagtaaaagtgatttatttagaatattcgagtttgtgcaatattcattaattt 9226097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 38434412 - 38434354
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38434412 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 38434354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 42996848 - 42996906
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  42996848 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 42996906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 4481346 - 4481283
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaattt 100  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  4481346 cttgattttcacatttatgaacggcagtaatttcttagaaagatgcagttatttcccttaattt 4481283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 19123052 - 19123129
Alignment:
Q  38 ttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttta 116  Q
    |||||||||| |||||| |||||||||| | |||||||||||||||  ||| | ||||||||||||||||| |||||||    
T  19123052 ttgattttcatatttataaacgacaatattctcttagaaaaatgcg-ctatctcccttaatttgctcatttatccttta 19123129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 19124047 - 19124131
Alignment:
Q  38 ttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaa 122  Q
    |||||||| ||| |||| |||||||| ||| | |||||||||||||  ||| | |||||||||||||||||||| |||| |||||    
T  19124047 ttgatttttacaattataaacgacaacaatcttttagaaaaatgcggctatctcccttaatttgctcatttctcatttagaacaa 19124131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 25178 - 25082
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||  |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25178 catttatgaacgacaacaatttcttaagaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 25082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 25052 - 24994
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||    
T  25052 aaaatacagtaaaagtggtttatttagaatatctgagtttgtgcaatattcattaattt 24994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 2961262 - 2961168
Alignment:
Q  50 tttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||| ||||||||| ||||||||   ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2961262 tttatgaacgacaacaatttcttaaaaaaatgcagctatttcccttaatttgctcatttcttctttataacaaagatttttctattttaatccct 2961168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 39204675 - 39204768
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||    
T  39204675 cttgattttcacatttatgaacggcaacaatttcttaggaaaatgcaattattttccttaatttgttcatttctcctttataacaaagtttttt 39204768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 29434083 - 29434178
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttct 132  Q
    ||||||||||| |||||||||| |||  ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29434083 cttgattttcatatttatgaacaacatcaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagttttttct 29434178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 39445065 - 39445158
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  39445065 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 39445158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 2961141 - 2961083
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2961141 aaaatacagtaaaagtgatttatttagaatatccgagtttgttcaatattcattaattt 2961083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 23626287 - 23626193
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||  ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  23626287 cttgattttcacatttatgaacagcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 23626193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 39204771 - 39204833
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39204771 aaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatatttattaatttactc 39204833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 12250142 - 12250049
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  12250142 cttgattttcacgtttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 12250049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12250046 - 12249988
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  12250046 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 12249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 23626190 - 23626132
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  23626190 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 23626132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 29434181 - 29434239
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  29434181 aaaatacagtaaaagtgatttatttagaatatctgagtttgtgcaatatttattaattt 29434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 39445161 - 39445219
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  39445161 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 39445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 41907822 - 41907915
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||| |||||||||||  |||| ||||||||||||| ||||   ||||| ||||||||||||||||||||||||  ||||||| |||||    
T  41907822 cttgattttgacatttatgaaaaacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttgaaacaaagtttttt 41907915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 41907917 - 41907975
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||||    
T  41907917 aaaatacagtaaaagtgatttatttagaataaccggatttgtgcaatattcattaattt 41907975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 61525 - 61618
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  61525 cttgattttcacatttatgaacgacaacaatttcttagaaagatacagttatttcccttaatttgctcatttctcctttataacaaagtttttt 61618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 61620 - 61678
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  61620 aaaatatagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 61678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 12714785 - 12714878
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  12714785 cttgattttcacatttatgaacgacaacaatttcatagaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 12714878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 28631620 - 28631714
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  28631620 cttgattttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 28631714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 13662348 - 13662255
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  13662348 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 13662255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 28565658 - 28565565
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||      ||| ||||||||||||||||||||||||||||||||| |||||    
T  28565658 cttgattttcacatttatgaacgacaacaatttcatagaaaaatgtagccttttcccttaatttgctcatttctcctttataacaaagtttttt 28565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 15317553 - 15317611
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15317553 aaaatacagcaaaattgatttatttagaatattcgagtttgtgcaatattcattaattt 15317611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 28565559 - 28565506
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28565559 tacagtaaaagtgattt-tttagaatatccgagtttgtgcaatattcattaattt 28565506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 28631718 - 28631776
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  28631718 aaaatacaataaaaatgattcatttataatatccgagtttgtgcaatattcattaattt 28631776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 15317490 - 15317551
Alignment:
Q  69 tcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  15317490 tcttagaaaaatgcagctattttccttaatttgctcatttctcctttataacaaagtttttt 15317551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 12714884 - 12714937
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  12714884 tacagtaaaagtgattt-tttaaaatatccgagtttgtgcaatattcattaattt 12714937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 13662247 - 13662196
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  13662247 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 13662196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 11041 - 10945
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||| |||||| || ||||||||| ||||||||||||||||||||||    
T  11041 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgttcatttatcttttataacatagatttttctattttaatccct 10945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 10915 - 10857
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  10915 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaagattcattaattt 10857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 52923 - 52830
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  52923 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 52830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 52827 - 52769
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  52827 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 52769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University