View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_high_19 (Length: 247)
Name: NF17885_high_19
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 52166110 - 52166341
Alignment:
| Q |
1 |
gtgcacaagctgcaaatgcaaatcctttgtatttgtattataagaatggttggaaagagtttaaagcaattaaagccgaaacaacttttgcttctgctat |
100 |
Q |
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| T |
52166110 |
gtgcacaagctgcaaatgcaaatcctttgtatttgtattataagaatggttggaaagagtttaaagcaattaaagccgaaacaacttttgcttctgctat |
52166209 |
T |
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| Q |
101 |
tcaaattggtgatcctgtttcaattgatagagctgtttatgcattgaagaattctgatgggattgttgaggaagctagtgaagaggaattgatggatgca |
200 |
Q |
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| T |
52166210 |
tcaaattggtgatcctgtttcaattgatagagctgtttatgcattgaagaattctgatgggattgttgaggaagctagtgaagaggaattgatggatgca |
52166309 |
T |
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| Q |
201 |
atggcacttgctgattcaactggaatgtttat |
232 |
Q |
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| T |
52166310 |
atggcacttgctgattcaactggaatgtttat |
52166341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 42664026 - 42664248
Alignment:
| Q |
9 |
gctgcaaatgcaaatcctttgtatttgtattataagaatggttggaaagagtttaaagcaattaaagccgaaacaacttttgcttctgctattcaaattg |
108 |
Q |
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| T |
42664026 |
gctgccaatgcgaatccgttgtatttgtattttaagtcggggtggaaagagtttaaggcagtgagggcacaaactacttttgcatctgctatacagatcg |
42664125 |
T |
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| Q |
109 |
gtgatcctgtttcaattgatagagctgtttatgcattgaagaattctgatgggattgttgaggaagctagtgaagaggaattgatggatgcaatggcact |
208 |
Q |
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| T |
42664126 |
gtgatccggtttctattgatagagctgttcatgctttgaagaactgcaatgggattgttgaggaagctactgaggaggaattgatggatgctatggctca |
42664225 |
T |
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| Q |
209 |
tgctgattcaactggaatgttta |
231 |
Q |
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| T |
42664226 |
agctgattcgacggggatgttta |
42664248 |
T |
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