View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17885_high_2 (Length: 569)

Name: NF17885_high_2
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17885_high_2
NF17885_high_2
[»] chr6 (1 HSPs)
chr6 (22-559)||(5951298-5951835)
[»] chr5 (1 HSPs)
chr5 (169-344)||(31951650-31951825)
[»] chr3 (6 HSPs)
chr3 (198-328)||(28188578-28188708)
chr3 (410-494)||(28153837-28153921)
chr3 (177-270)||(36630146-36630239)
chr3 (261-359)||(28507736-28507834)
chr3 (22-81)||(28188391-28188450)
chr3 (23-81)||(18077779-18077837)
[»] chr2 (3 HSPs)
chr2 (410-552)||(22396537-22396679)
chr2 (292-356)||(22396747-22396811)
chr2 (196-232)||(22396846-22396882)
[»] chr7 (2 HSPs)
chr7 (177-231)||(27092402-27092456)
chr7 (177-231)||(27185845-27185899)
[»] scaffold1163 (1 HSPs)
scaffold1163 (196-232)||(2254-2290)


Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 22 - 559
Target Start/End: Complemental strand, 5951835 - 5951298
Alignment:
Q  22 ggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttattttgatatccttcggcaactcatattactaggctacatcttct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951835 ggtctagcagcgattcttcgtggttcgcagccggcacacagtgttattggtacttattttgatatccttcggcaactcatattactaggctacatcttct 5951736  T
Q  122 gttgcaagtagtgagccgctctaataattctgcgttaatactttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaat 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951735 gttgcaagtagtgagccgctctaataattctgtgttaatactttctcttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaat 5951636  T
Q  222 acaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatata 321  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  5951635 acaatgaacttgttgatgtgtactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtgagtgtactaacccggcacaaatata 5951536  T
Q  322 caagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951535 caagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgttc 5951436  T
Q  422 agggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaa 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951435 agggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgagagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaaa 5951336  T
Q  522 agaactgttgcatgatccatttcttgtgtctgatgatg 559  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5951335 agaactgttgcatgatccatttcttgtgtctgatgatg 5951298  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 169 - 344
Target Start/End: Complemental strand, 31951825 - 31951650
Alignment:
Q  169 ttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaa 268  Q
    |||||||  |||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31951825 ttttgtgttaggaacaccggagttcatggcaccggaaatgtacgaggaagaatacaatgaacttgctgatgtttactcatttggcatgtgtgtattggaa 31951726  T
Q  269 attatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaatt 344  Q
    ||  | ||||| || |||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||    
T  31951725 atgctcacatctgattatccatatagtgaatgtactaatccagcacagatatacaagaaagtgacatcggtaaatt 31951650  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 28188578 - 28188708
Alignment:
Q  198 caccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtga 297  Q
    |||||||  |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||   | | ||| ||||||||    
T  28188578 caccagaactgtatgatgaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgctttggaaattattacatattattgtccttatagtga 28188677  T
Q  298 gtgtactaacccagcgcaaatatacaagaaa 328  Q
    |||| ||||| | ||| | ||||||||||||    
T  28188678 gtgtgctaacacggcgtagatatacaagaaa 28188708  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
Q  410 ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt 494  Q
    |||| |||||||| |||| ||||||||||||||||||| || ||||||||||| |||||   |||||||||||||||||||||||    
T  28153837 cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt 28153921  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 36630239 - 36630146
Alignment:
Q  177 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaat 270  Q
    |||| ||||| || |||||||| |||||| | || || ||||||||||||||||||||||| || || || |||||||||||| | ||||||||    
T  36630239 caggtactccagaattcatggccccagagctttatgaggaagaatacaatgaacttgttgacgtatattcctttggcatgtgtatcttggaaat 36630146  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 28507834 - 28507736
Alignment:
Q  261 ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaa 359  Q
    |||||||||| || ||||| ||||||| ||||||||| |||||  || | || || |||||||||||||||| |||| | ||||| ||| |||||||||    
T  28507834 ttttggaaatgattacatctgactatctatatagtgaatgtacagactcggcacatatatacaagaaagtgaaatcgtttaattacgaatttggtttaa 28507736  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 28188391 - 28188450
Alignment:
Q  22 ggtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt 81  Q
    |||||| ||||||||||||||| |||||| ||  | |||||||||||| |||||||||||    
T  28188391 ggtctaacagcgattcttcgtgtttcgcaaccaacgcacagtgttataagtacttatttt 28188450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 18077837 - 18077779
Alignment:
Q  23 gtctagcagcgattcttcgtggttcgcagccggcacacagtgttataggtacttatttt 81  Q
    ||||||||| |||||| | ||||||  |||| |||||||||||||||||||||| ||||    
T  18077837 gtctagcagggattctccatggttcatagccagcacacagtgttataggtacttgtttt 18077779  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 410 - 552
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
Q  410 ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag 509  Q
    |||| ||||||||| |||||||||||| | ||||| |||  || |||||||| |||| ||| |||||||||| |||||||||||| || |||| ||  |     
T  22396679 cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa 22396580  T
Q  510 accatcagcaaaagaactgttgcatgatccatttcttgtgtct 552  Q
    ||| |  |||||| ||||| |||||||||||||||||||||||    
T  22396579 acctttggcaaaataactgctgcatgatccatttcttgtgtct 22396537  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
Q  292 tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt 356  Q
    ||||||||||||| ||||||| |   ||| ||||||||||||||||||||||| ||| |||||||    
T  22396811 tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt 22396747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 22396882 - 22396846
Alignment:
Q  196 ggcaccagagttgtacgaagaagaatacaatgaactt 232  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22396882 ggcaccagaattgtacgaagaagaataaaatgaactt 22396846  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 27092456 - 27092402
Alignment:
Q  177 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact 231  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  27092456 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27092402  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 27185845 - 27185899
Alignment:
Q  177 caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact 231  Q
    |||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||    
T  27185845 caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact 27185899  T

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Target: scaffold1163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 2290 - 2254
Alignment:
Q  196 ggcaccagagttgtacgaagaagaatacaatgaactt 232  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2290 ggcaccagaattgtacgaagaagaatacaatgaactt 2254  T

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