View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17885_high_22 (Length: 219)
Name: NF17885_high_22
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_high_22 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 25948960 - 25948752
Alignment:
| Q |
11 |
aacctgtggagtaaaaattatcctcctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25948960 |
aaccagtggagtaaaaattatcctcctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggt |
25948861 |
T |
|
| Q |
111 |
tgcttcagatcaataatctgagtttggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatatctttgga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25948860 |
tgcttcagatcaataatctgagtttggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgcatatctttgga |
25948761 |
T |
|
| Q |
211 |
cactttgcc |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
25948760 |
cactttgcc |
25948752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 25959009 - 25958826
Alignment:
| Q |
36 |
ctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggttgcttcagatcaataatctgagttt |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| || ||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
25959009 |
ctcaacctcaagcagagaaatatgaccaagttacacttgatacaaagtcctttgagccaatggttaacttgagattgcttcagatcgataatctgagttt |
25958910 |
T |
|
| Q |
136 |
ggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatatctttggacactttgcc |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
25958909 |
ggaaggtaagtttcttccagatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatacatttgaacactttgcc |
25958826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University