View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_10 (Length: 322)
Name: NF17885_low_10
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 5951008 - 5951321
Alignment:
| Q |
9 |
agaagcataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattttctctacaacgaaccatatatagctttga |
108 |
Q |
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| T |
5951008 |
agaagaataggaaacgttgctgcggttaaataggacgaagcatgtagtcatagagatttaaaacaaaattttctctacaacgaaccagatatagctttga |
5951107 |
T |
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| Q |
109 |
gtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcaggatttcgcttcctagttattgacattgaag |
208 |
Q |
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| T |
5951108 |
gtaataagaaaacatcaggtaccgttcttgtcaacaatctgcactttgagaaagagagcatcaccgtcaggatttcgcttcctagttattgacattgaag |
5951207 |
T |
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| Q |
209 |
ccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcataccacttactgttatcgatgattcatcatcaga |
308 |
Q |
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| T |
5951208 |
ccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaatggatcctgcataccacttactgttatcgatgattcatcatcaga |
5951307 |
T |
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| Q |
309 |
cacaagaaatggat |
322 |
Q |
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| T |
5951308 |
cacaagaaatggat |
5951321 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 18077537 - 18077616
Alignment:
| Q |
185 |
gcttcctagttattgacattgaagccctagctgaatcgcccctcagttgaagtttatccatttcagtgtagtttaaaaat |
264 |
Q |
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| T |
18077537 |
gcttcccaattattgacattgaagtcctaagtgaatcgcttctcaattgaagtttatccatcacagtgtaatttaaaaat |
18077616 |
T |
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