View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_11 (Length: 301)
Name: NF17885_low_11
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 52166079 - 52165794
Alignment:
| Q |
1 |
ctaaatctttacacattttaaaacctttgtaaaatgcataaatattacctaaatttccaccaggtacaatcacccaatcaggtacctgccaatcaaactg |
100 |
Q |
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| T |
52166079 |
ctaaatctttacacattttgaaacctttgtaaaatgcataaatattccccaaatttccaccaggtacaatcacccagtcaggtacctgccaatcaaactg |
52165980 |
T |
|
| Q |
101 |
ctgcaaaatctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggcaattcagaagtaatttccctaatc |
200 |
Q |
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| T |
52165979 |
ctgcaaaatctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggcaattcagaagtaatttccctaatc |
52165880 |
T |
|
| Q |
201 |
agcttcatgcaaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttgaaacaggctgaatcaactgggcggttgagat |
286 |
Q |
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| T |
52165879 |
agcttcatgcaaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttgaaacaggctgaatcaactgggcggttgagat |
52165794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 42663978 - 42663733
Alignment:
| Q |
10 |
tacacattttaaaacctttgtaaaatgcataaatattacctaaatttccaccaggtacaatcacccaatcaggtacctgccaatcaaactgctgcaaaat |
109 |
Q |
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| T |
42663978 |
tacacatatgaaaccctttataaaaagcataaatattcccaagattcccacccggcacaataacccaatccggcacctgccaatcaaactgctgcaaaat |
42663879 |
T |
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| Q |
110 |
ctcaatagcagcagttttctgtccttcaattcgcaaactattcaacgaattcgccaaataaatcggcaattcagaagtaatttccctaatcagcttcatg |
209 |
Q |
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| T |
42663878 |
ctcaatggcagctgttttctgtccttcaagcctcaaactattaagcgaattcgccaaataaatcggcaattcagcagtcacctctcttatcaactgcata |
42663779 |
T |
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| Q |
210 |
caaccatcgaaatcagtgtcaatactaagcaccaatgcaccatttg |
255 |
Q |
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| T |
42663778 |
cacccatcaaaatcagtatcaatgctaagaacaaaagcaccatttg |
42663733 |
T |
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