View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_14 (Length: 269)
Name: NF17885_low_14
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 39527710 - 39527943
Alignment:
| Q |
17 |
tttacaactcaatattcagtcccacacaacattgtgatttgtaagtttatggctacaccgtaaaatctttgtttaagcttaagtggtagtttatatcaca |
116 |
Q |
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| T |
39527710 |
tttacaactcaatattcagtcccacacaacattgtaatttgta-gtttatggctacatcgtaaaatctttgtttaagcttaagtggtagtttatatcaca |
39527808 |
T |
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| Q |
117 |
cagatctaactcaaattattcctctattttgtccaccctacttggatcctatagttgacatctcctatatatcggtcatttagtttgatggagctgtcgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
39527809 |
gagatctaactcaaattattcctctattttgtccaccctacttggatcctatagttgacatctcctatatatcagtcatttagtttgagggagctgtcgg |
39527908 |
T |
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| Q |
217 |
aaaagagaatagagagagacatggtttcctcatca |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39527909 |
aaaagagaatagagagagacatggtttcctcatca |
39527943 |
T |
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