View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17885_low_19 (Length: 248)

Name: NF17885_low_19
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17885_low_19
NF17885_low_19
[»] scaffold0006 (4 HSPs)
scaffold0006 (16-144)||(64555-64683)
scaffold0006 (169-227)||(64469-64527)
scaffold0006 (37-130)||(152017-152110)
scaffold0006 (175-227)||(151958-152009)
[»] chr4 (8 HSPs)
chr4 (16-144)||(1944717-1944845)
chr4 (50-144)||(15650645-15650739)
chr4 (37-124)||(3839248-3839335)
chr4 (169-227)||(1944873-1944931)
chr4 (37-129)||(26870166-26870259)
chr4 (169-227)||(15650560-15650618)
chr4 (169-227)||(3839171-3839229)
chr4 (169-227)||(26870105-26870163)
[»] chr2 (12 HSPs)
chr2 (16-144)||(10821127-10821255)
chr2 (37-130)||(14753445-14753538)
chr2 (37-130)||(17025927-17026021)
chr2 (37-130)||(17092112-17092206)
chr2 (169-227)||(10821048-10821106)
chr2 (169-227)||(17026024-17026082)
chr2 (37-130)||(16884059-16884152)
chr2 (37-130)||(17041749-17041842)
chr2 (169-224)||(17092209-17092264)
chr2 (169-231)||(16884155-16884217)
chr2 (169-231)||(17041845-17041907)
chr2 (169-227)||(14753540-14753598)
[»] chr5 (11 HSPs)
chr5 (48-227)||(9809896-9810072)
chr5 (48-227)||(7863602-7863780)
chr5 (48-227)||(12702136-12702313)
chr5 (48-144)||(12763232-12763329)
chr5 (37-119)||(3210071-3210153)
chr5 (37-130)||(290742-290835)
chr5 (37-130)||(9702518-9702612)
chr5 (169-227)||(12763152-12763210)
chr5 (169-227)||(3209999-3210057)
chr5 (177-227)||(290845-290895)
chr5 (169-227)||(9702616-9702674)
[»] chr3 (14 HSPs)
chr3 (48-227)||(26035889-26036064)
chr3 (37-130)||(35437067-35437160)
chr3 (37-129)||(11383411-11383503)
chr3 (37-123)||(12157851-12157937)
chr3 (37-130)||(16496189-16496282)
chr3 (41-130)||(36164965-36165054)
chr3 (37-130)||(54792827-54792920)
chr3 (48-144)||(15315424-15315520)
chr3 (169-227)||(35437162-35437220)
chr3 (169-231)||(36164901-36164963)
chr3 (169-227)||(12157785-12157843)
chr3 (175-227)||(16496290-16496341)
chr3 (173-227)||(54792768-54792821)
chr3 (170-218)||(15315353-15315401)
[»] chr6 (8 HSPs)
chr6 (48-227)||(8614872-8615051)
chr6 (48-144)||(5753262-5753358)
chr6 (48-144)||(33318824-33318920)
chr6 (37-130)||(1932151-1932244)
chr6 (169-227)||(4425815-4425873)
chr6 (37-130)||(4425720-4425813)
chr6 (169-227)||(1932247-1932305)
chr6 (169-227)||(33318959-33319017)
[»] chr7 (12 HSPs)
chr7 (37-130)||(9226157-9226250)
chr7 (48-144)||(34130539-34130635)
chr7 (37-130)||(38434415-38434509)
chr7 (170-227)||(42244657-42244714)
chr7 (37-139)||(42244713-42244815)
chr7 (37-129)||(42996752-42996845)
chr7 (169-227)||(9226097-9226155)
chr7 (169-227)||(38434354-38434412)
chr7 (169-227)||(42996848-42996906)
chr7 (37-100)||(4481283-4481346)
chr7 (38-116)||(19123052-19123129)
chr7 (38-122)||(19124047-19124131)
[»] scaffold0249 (2 HSPs)
scaffold0249 (48-144)||(25082-25178)
scaffold0249 (169-227)||(24994-25052)
[»] chr8 (14 HSPs)
chr8 (50-144)||(2961168-2961262)
chr8 (37-130)||(39204675-39204768)
chr8 (37-132)||(29434083-29434178)
chr8 (37-129)||(39445065-39445158)
chr8 (169-227)||(2961083-2961141)
chr8 (37-130)||(23626193-23626287)
chr8 (169-231)||(39204771-39204833)
chr8 (37-129)||(12250049-12250142)
chr8 (169-227)||(12249988-12250046)
chr8 (169-227)||(23626132-23626190)
chr8 (169-227)||(29434181-29434239)
chr8 (169-227)||(39445161-39445219)
chr8 (37-130)||(41907822-41907915)
chr8 (169-227)||(41907917-41907975)
[»] scaffold0051 (2 HSPs)
scaffold0051 (37-130)||(61525-61618)
scaffold0051 (169-227)||(61620-61678)
[»] chr1 (10 HSPs)
chr1 (37-130)||(12714785-12714878)
chr1 (37-130)||(28631620-28631714)
chr1 (37-130)||(13662255-13662348)
chr1 (37-130)||(28565565-28565658)
chr1 (169-227)||(15317553-15317611)
chr1 (173-227)||(28565506-28565559)
chr1 (169-227)||(28631718-28631776)
chr1 (69-130)||(15317490-15317551)
chr1 (173-227)||(12714884-12714937)
chr1 (175-227)||(13662196-13662247)
[»] scaffold0376 (2 HSPs)
scaffold0376 (48-144)||(10945-11041)
scaffold0376 (169-227)||(10857-10915)
[»] scaffold0088 (2 HSPs)
scaffold0088 (37-129)||(52830-52923)
scaffold0088 (169-227)||(52769-52827)


Alignment Details
Target: scaffold0006 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 64683 - 64555
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  64683 atagaacatgctcttttcctacttgattttcacatttatgaacgacaacaatttcttagaaaaatgcggctatttgccttaatttgctcatttctccttt 64584  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  64583 ataacaaagatttttctattttaatccct 64555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 64527 - 64469
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64527 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 64469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 152110 - 152017
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  152110 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 152017  T

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Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 152009 - 151958
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  152009 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 151958  T

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Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 1944717 - 1944845
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  1944717 atagaacatgctcttttcctacttgattttcacatttatgaacgacaacaatttcttagaaaaatgcggctatttgccttaatttgctcatttctccttt 1944816  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  1944817 ataacaaagatttttctattttaatccct 1944845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 15650739 - 15650645
Alignment:
Q  50 tttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||| ||||||||| ||||||||   ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15650739 tttatgaacgacaacaatttcttaaaaaaatgcagctatttcccttaatttgctcatttcttctttataacaaagatttttctattttaatccct 15650645  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 3839335 - 3839248
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaag 124  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||   ||||| |||||||||||||||||||||||||||||||||    
T  3839335 cttgattttcacatttatgaacaacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaag 3839248  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1944873 - 1944931
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1944873 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 1944931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 26870259 - 26870166
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  26870259 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 26870166  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 15650618 - 15650560
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15650618 aaaatacagtaaaagtgatttatttagaatatccgagtttgttcaatattcattaattt 15650560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 3839229 - 3839171
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  3839229 aaaatacagtaaaagtgatttatttagaatatccaagtttgtgcaatatttattaattt 3839171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 26870163 - 26870105
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  26870163 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 26870105  T

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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 10821255 - 10821127
Alignment:
Q  16 atagaacatgcttttttcctacttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttt 115  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||   ||||| ||||||||||||||||||||||||    
T  10821255 atagaacatgttcttttcctacttgattttcacatttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctccttt 10821156  T
Q  116 ataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||||||||||||||||    
T  10821155 ataacaaagatttttctattttaatccct 10821127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 14753445 - 14753538
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||| ||||||||||||||||| ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  14753445 cttgattttaacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 14753538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17025927 - 17026021
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  17025927 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagnttttt 17026021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17092112 - 17092206
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  17092112 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 17092206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 10821106 - 10821048
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  10821106 aaaatacagtaaaagtgatttatttagaatatccaagtttgttcaatattcattaattt 10821048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 17026024 - 17026082
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  17026024 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 17026082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 16884059 - 16884152
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||||  || |||||||||||||||||    ||||| |||||| || ||||| ||||||||||||||||| |||||    
T  16884059 cttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaagttactcatctctcctttataacaaagtttttt 16884152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 17041749 - 17041842
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||||  || |||||||||||||||||    ||||| |||||| || ||||| ||||||||||||||||| |||||    
T  17041749 cttgattttcacatttatgaacggaaacaatttcttagaaaaatgaagctatttcccttaagttactcatctctcctttataacaaagtttttt 17041842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 17092209 - 17092264
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaa 224  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  17092209 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaa 17092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 16884155 - 16884217
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||| ||||    
T  16884155 aaaatacagtaaaagtgatttatttagaatatccgagttaatgcaacattcattaattaactc 16884217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 17041845 - 17041907
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||| ||||    
T  17041845 aaaatacagtaaaagtgatttatttagaatatccgagttaatgcaacattcattaattaactc 17041907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 14753540 - 14753598
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||| | | ||||||||||||||||||||||    
T  14753540 aaaatatagtaaaagtgatttatttagaatattcaaatttgtgcaatattcattaattt 14753598  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 9810072 - 9809896
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9810072 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 9809973  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||          ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9809972 aaaaa---aaagttttttttttaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 9809896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 7863780 - 7863602
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||  |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7863780 catttatgaacgacagcaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccct-aa 7863682  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
           |||||          ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7863681 aaaaaaacaaagttttttttttaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 7863602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 12702313 - 12702136
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  12702313 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 12702214  T
Q  148 nnnnnnncaaag--nnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12702213 aaaa----aaagtttttttttttaaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 12702136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 12763329 - 12763232
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaattt-gctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| ||||||||||||||||||   ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12763329 catttatgaacgacaacaatttcttagaaaaatgcagctatttcccttaattttgctcatttctcctttataacaaagatttttctattttaatccct 12763232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 3210153 - 3210071
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataa 119  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  3210153 cttgattttcacatttatgaacgacaacaatttcttaggaaaatgcaattatttcccttaatttgctcatttctcctttataa 3210071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 290742 - 290835
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||  ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  290742 cttgattttcacatttatgaacggcatcaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 290835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 9702518 - 9702612
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctt-agaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||   ||||| | ||||||||||||||||| ||||||||||||| |||||    
T  9702518 cttgattttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcctttaatttgctcatttcttctttataacaaagtttttt 9702612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12763210 - 12763152
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12763210 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 12763152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 3210057 - 3209999
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  3210057 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgaaatattcattaattt 3209999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 290845 - 290895
Alignment:
Q  177 gtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  290845 gtaaaagtgatttatttagaatatccaagtttgtgcaatattcattaattt 290895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 9702616 - 9702674
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  9702616 aaaatacaataaaaatgattcatttataatatccgagtttgtgcaatattcattaattt 9702674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 227
Target Start/End: Complemental strand, 26036064 - 26035889
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    ||||||||||||| || |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  26036064 catttatgaacgaaaacaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 26035965  T
Q  148 nnnnnnncaaag-nnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||||          |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  26035964 aaa-----aaagttttttttttaaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatatttattaattt 26035889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 35437067 - 35437160
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||   ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  35437067 cttgattttcacatttatgaacgacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttttcctttataacaaagtttttt 35437160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 11383411 - 11383503
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||| ||||| ||||||||||| |  |||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  11383411 cttgattttcacatttatgaaggacaacaatttcttagagaggtgcagttatttcccttaatttgctcatttctcctttataacaaagatttt 11383503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 12157937 - 12157851
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaa 123  Q
    ||||||||||||||||| ||||||||| ||||||||||||| ||||  |||||| | ||||||||||||||||||||||||||||||    
T  12157937 cttgattttcacatttaggaacgacaacaatttcttagaaagatgcagttatttcctttaatttgctcatttctcctttataacaaa 12157851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 16496189 - 16496282
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  16496189 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 16496282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 130
Target Start/End: Complemental strand, 36165054 - 36164965
Alignment:
Q  41 attttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  36165054 attttcacatttatgaacgacaacaattttttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagtttttt 36164965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 54792920 - 54792827
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| |||||||||||||||||||| |||||||||||| |||||    
T  54792920 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcttttataacaaagtttttt 54792827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 15315520 - 15315424
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||  |||||||||| |||||||   |||||  ||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  15315520 catttatgaacgacagcaatttcttaggaaaatgcagctatttctctttatttgctcagttcttctttataacaaagatttttctattttaatccct 15315424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 35437162 - 35437220
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  35437162 aaaatatagtaaaaatgatttatttagaatatccgagtttgtgcaatattcattaattt 35437220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 36164963 - 36164901
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||| ||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||    
T  36164963 aaaatatagtaaaagtgatttatttaaaaaatccgagtttgtgcaatattaattaatttactc 36164901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12157843 - 12157785
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||||  |||||| |||||||||||||||||    
T  12157843 aaaatatagtaaaagtgatttatttagaatatcatagtttgagcaatattcattaattt 12157785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 16496290 - 16496341
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  16496290 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 16496341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 54792821 - 54792768
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||| |||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  54792821 tacattaaaagtgattt-tttagaatatccgaatttgtgcaatattcattaattt 54792768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 15315401 - 15315353
Alignment:
Q  170 aaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatatt 218  Q
    |||||| | |||||||||| ||||||||||| |||||||||||||||||    
T  15315401 aaatactggaaaagtgatttatttagaatattcgagtttgtgcaatatt 15315353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 8614872 - 8615051
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccctnnn 147  Q
    |||||||||||||||  |||||||||| |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  8614872 catttatgaacgacagcaatttcttaggaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccctaaa 8614971  T
Q  148 nnnnnnncaaagnnnnnnnnnaaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
            ||            ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8614972 aaaaaacaaagtttttttttttaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 8615051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 5753358 - 5753262
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  5753358 catttatgaacgacaacaatttcttaggaaaatgcagctattttccttaattttctcaattctcctttataacaaagatttttctattttaatccct 5753262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 33318824 - 33318920
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||  |||||||   ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33318824 catttatgaacgacaacaatttcttaagaaaatgcagctatttcccttaatttgttcatttctcctttataacaaagatttttctattttaatccct 33318920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 1932151 - 1932244
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||   |||||| ||||||||||||||||||| ||||||||||||| |||||    
T  1932151 cttgattttcacatttatgaacgacaacaatttcttagaaagatgtagttattttccttaatttgctcatttcttctttataacaaagtttttt 1932244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 4425815 - 4425873
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4425815 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 4425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 4425720 - 4425813
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    |||||||||||||||||||||| |||| ||||||||| ||| ||||   ||||| | |||||||| |||||||||||||||||||||| |||||    
T  4425720 cttgattttcacatttatgaacaacaacaatttcttaaaaagatgcagctattttcgttaatttgttcatttctcctttataacaaagtttttt 4425813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 1932247 - 1932305
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  1932247 aaaatatagtaacagtgatttatttagaatatccgagtttgtgcaatattcattaattt 1932305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 33318959 - 33319017
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  33318959 aaaatgcagtaaaagtggtttatttagaatattcgagtttgtgcaatattcattaattt 33319017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 9226250 - 9226157
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  9226250 cttgattttcacatttatgaacgacaacaatttcttagaaagatgcagttatttcccttaatttgctcatttctcctttataacaaagtttttt 9226157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 34130539 - 34130635
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34130539 catttatgaacgacaacaatttcttaggaaaatgcagctatttttcttaatttgctcatttctcctttataacaaagatttttctattttaatccct 34130635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 38434509 - 38434415
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  38434509 cttgattttcacatttatgaacggcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 38434415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 42244714 - 42244657
Alignment:
Q  170 aaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42244714 aaatacagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 42244657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 42244815 - 42244713
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattt 136  Q
    ||||||||||||||||||||| ||||  ||||||||||||| |||    ||||| |||||||||||||||||||||||||||| |||| ||||| | |||    
T  42244815 cttgattttcacatttatgaatgacagcaatttcttagaaagatgtagctattttccttaatttgctcatttctcctttataataaagtttttttttttt 42244716  T
Q  137 taa 139  Q
    |||    
T  42244715 taa 42244713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 42996752 - 42996845
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||| ||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  42996752 cttgattttgacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 42996845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 9226155 - 9226097
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  9226155 aaaatatagtaaaagtgatttatttagaatattcgagtttgtgcaatattcattaattt 9226097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 38434412 - 38434354
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  38434412 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 38434354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 42996848 - 42996906
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  42996848 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 42996906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 4481346 - 4481283
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaattt 100  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||  |||||| |||||||||    
T  4481346 cttgattttcacatttatgaacggcagtaatttcttagaaagatgcagttatttcccttaattt 4481283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 19123052 - 19123129
Alignment:
Q  38 ttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctccttta 116  Q
    |||||||||| |||||| |||||||||| | |||||||||||||||  ||| | ||||||||||||||||| |||||||    
T  19123052 ttgattttcatatttataaacgacaatattctcttagaaaaatgcg-ctatctcccttaatttgctcatttatccttta 19123129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 19124047 - 19124131
Alignment:
Q  38 ttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaa 122  Q
    |||||||| ||| |||| |||||||| ||| | |||||||||||||  ||| | |||||||||||||||||||| |||| |||||    
T  19124047 ttgatttttacaattataaacgacaacaatcttttagaaaaatgcggctatctcccttaatttgctcatttctcatttagaacaa 19124131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 25178 - 25082
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||  |||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25178 catttatgaacgacaacaatttcttaagaaaatgcagctatttcccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 25082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 25052 - 24994
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||    
T  25052 aaaatacagtaaaagtggtttatttagaatatctgagtttgtgcaatattcattaattt 24994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 2961262 - 2961168
Alignment:
Q  50 tttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||| ||||||||| ||||||||   ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2961262 tttatgaacgacaacaatttcttaaaaaaatgcagctatttcccttaatttgctcatttcttctttataacaaagatttttctattttaatccct 2961168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 39204675 - 39204768
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||    
T  39204675 cttgattttcacatttatgaacggcaacaatttcttaggaaaatgcaattattttccttaatttgttcatttctcctttataacaaagtttttt 39204768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 29434083 - 29434178
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttct 132  Q
    ||||||||||| |||||||||| |||  ||||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||| |||||||    
T  29434083 cttgattttcatatttatgaacaacatcaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttataacaaagttttttct 29434178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Original strand, 39445065 - 39445158
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  39445065 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 39445158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 2961141 - 2961083
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  2961141 aaaatacagtaaaagtgatttatttagaatatccgagtttgttcaatattcattaattt 2961083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 23626287 - 23626193
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||  ||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  23626287 cttgattttcacatttatgaacagcaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 23626193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 39204771 - 39204833
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaatttactc 231  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  39204771 aaaatacaataaaagtgatttatttagaatatccgagtttgtgcaatatttattaatttactc 39204833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 12250142 - 12250049
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  12250142 cttgattttcacgtttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 12250049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 12250046 - 12249988
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  12250046 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 12249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 23626190 - 23626132
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  23626190 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 23626132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 29434181 - 29434239
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  29434181 aaaatacagtaaaagtgatttatttagaatatctgagtttgtgcaatatttattaattt 29434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 39445161 - 39445219
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  39445161 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 39445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 41907822 - 41907915
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||| |||||||||||  |||| ||||||||||||| ||||   ||||| ||||||||||||||||||||||||  ||||||| |||||    
T  41907822 cttgattttgacatttatgaaaaacaacaatttcttagaaagatgcagctatttcccttaatttgctcatttctcctttgaaacaaagtttttt 41907915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 41907917 - 41907975
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| |||||||||| |||  ||||||||||||||||||||||    
T  41907917 aaaatacagtaaaagtgatttatttagaataaccggatttgtgcaatattcattaattt 41907975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 61525 - 61618
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| || |  |||||| ||||||||||||||||||||||||||||||||| |||||    
T  61525 cttgattttcacatttatgaacgacaacaatttcttagaaagatacagttatttcccttaatttgctcatttctcctttataacaaagtttttt 61618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 61620 - 61678
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  61620 aaaatatagtaaaagtgatttatttagaatatccgagtttgtgcaatattcattaattt 61678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 12714785 - 12714878
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  12714785 cttgattttcacatttatgaacgacaacaatttcatagaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 12714878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 28631620 - 28631714
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| |||||    
T  28631620 cttgattttcacatttatgaacgacaacaatttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagtttttt 28631714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 13662348 - 13662255
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| || ||||||||   | ||| ||||||||||||||||||||||||||||||||| |||||    
T  13662348 cttgattttcacatttatgaacgacaacaatttcataaaaaaatgcagctttttcccttaatttgctcatttctcctttataacaaagtttttt 13662255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 28565658 - 28565565
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||      ||| ||||||||||||||||||||||||||||||||| |||||    
T  28565658 cttgattttcacatttatgaacgacaacaatttcatagaaaaatgtagccttttcccttaatttgctcatttctcctttataacaaagtttttt 28565565  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 15317553 - 15317611
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  15317553 aaaatacagcaaaattgatttatttagaatattcgagtttgtgcaatattcattaattt 15317611  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 28565559 - 28565506
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28565559 tacagtaaaagtgattt-tttagaatatccgagtttgtgcaatattcattaattt 28565506  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 28631718 - 28631776
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  28631718 aaaatacaataaaaatgattcatttataatatccgagtttgtgcaatattcattaattt 28631776  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 15317490 - 15317551
Alignment:
Q  69 tcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagattttt 130  Q
    ||||||||||||||   ||||| ||||||||||||||||||||||||||||||||| |||||    
T  15317490 tcttagaaaaatgcagctattttccttaatttgctcatttctcctttataacaaagtttttt 15317551  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 12714884 - 12714937
Alignment:
Q  173 tacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  12714884 tacagtaaaagtgattt-tttaaaatatccgagtttgtgcaatattcattaattt 12714937  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 13662247 - 13662196
Alignment:
Q  175 cagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  13662247 cagtaaaagtgattt-tttagaatatccgagtttgtacaatattcattaattt 13662196  T

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Target: scaffold0376 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 11041 - 10945
Alignment:
Q  48 catttatgaacgacaataatttcttagaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttttctattttaatccct 144  Q
    |||||||||||||||| |||||||||| |||||||   ||||| |||||||||| |||||| || ||||||||| ||||||||||||||||||||||    
T  11041 catttatgaacgacaacaatttcttaggaaaatgcagctatttcccttaatttgttcatttatcttttataacatagatttttctattttaatccct 10945  T

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Target: scaffold0376; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 10915 - 10857
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  10915 aaaatacagtaaaagtgatttatttagaatatccgagtttgtgcaagattcattaattt 10857  T

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Target: scaffold0088 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 52923 - 52830
Alignment:
Q  37 cttgattttcacatttatgaacgacaataatttctta-gaaaaatgcgattatttgccttaatttgctcatttctcctttataacaaagatttt 129  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||    
T  52923 cttgattttcacatttatgaacgacaacattttcttaagaaaaatgcagatatttcccttaatttgctcatttcttctttataacaaagttttt 52830  T

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Target: scaffold0088; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 52827 - 52769
Alignment:
Q  169 aaaatacagtaaaagtgattaatttagaatatccgagtttgtgcaatattcattaattt 227  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  52827 aaaatacaataaaagtgattcatttataatatccgagtttgtgcaatattcattaattt 52769  T

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