View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17885_low_21 (Length: 240)
Name: NF17885_low_21
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32770447 - 32770223
Alignment:
| Q |
1 |
gccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32770447 |
gccgaggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccttgaacatcatttgggacaagaagcgtgataaaacacatgtctg |
32770348 |
T |
|
| Q |
101 |
aatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32770347 |
aatgagctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaaccatgttatcaccccctgcatactcctt |
32770248 |
T |
|
| Q |
201 |
tagctcatgaccttcaagccctaac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32770247 |
tagctcatgaccttcaagccctaac |
32770223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 24400540 - 24400375
Alignment:
| Q |
7 |
gggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatgag |
106 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| || ||||| ||||| | || || | |||| |||| |||| || | |
|
|
| T |
24400540 |
gggacatacttaacatcataccattgaccatctctagaggcttgaaggccctgcacttcattagggaccaaaatggtaagaaaagacatatctgtgtgtg |
24400441 |
T |
|
| Q |
107 |
ctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgatctttaacaagtgaa |
172 |
Q |
| |
|
|| ||||| ||||||||||||||| || || ||||||||||||||||| || |||| ||||| |
|
|
| T |
24400440 |
gaggcacacctagaacaagatcaggaactggacatggtgggtaatagttgattttcaacatgtgaa |
24400375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 24407355 - 24407203
Alignment:
| Q |
6 |
ggggacatacttaacatcgtaccattgtccatctctagaggcttgaagaccctgaacatcatttgggacaagaagcgtgataaaacacatgtctgaatga |
105 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| || | ||||| || ||| ||||||| |||| || |
|
|
| T |
24407355 |
ggggacatacttaacatcataccattgaccatctctagaggcttgaagaccctccacttcattgggtatgagaagggtaatataacacatatctgtgtgt |
24407256 |
T |
|
| Q |
106 |
gctggaacaccaagaacaagatcaggacaggggcaaggtgggtaatagttgat |
158 |
Q |
| |
|
| ||| ||||| || || ||||||||||| || || |||||||| || ||||| |
|
|
| T |
24407255 |
ggtggcacacctagtaccagatcaggacatggacatggtgggtagtaattgat |
24407203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University