View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17885_low_22 (Length: 235)

Name: NF17885_low_22
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17885_low_22
NF17885_low_22
[»] chr4 (3 HSPs)
chr4 (1-220)||(24894508-24894726)
chr4 (154-215)||(47533704-47533765)
chr4 (153-214)||(53711808-53711869)
[»] chr2 (6 HSPs)
chr2 (152-215)||(37210215-37210278)
chr2 (157-217)||(3256966-3257026)
chr2 (156-214)||(32978970-32979028)
chr2 (156-217)||(29927697-29927758)
chr2 (156-217)||(38342373-38342433)
chr2 (153-220)||(28814663-28814730)
[»] chr6 (2 HSPs)
chr6 (155-215)||(1038296-1038356)
chr6 (156-215)||(32549528-32549587)
[»] chr7 (4 HSPs)
chr7 (156-215)||(20183029-20183088)
chr7 (155-221)||(33487301-33487367)
chr7 (155-217)||(25244177-25244239)
chr7 (156-214)||(42082833-42082891)
[»] chr5 (2 HSPs)
chr5 (160-217)||(40767210-40767267)
chr5 (154-217)||(39043523-39043586)
[»] chr1 (1 HSPs)
chr1 (153-214)||(9688336-9688397)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24894508 - 24894726
Alignment:
Q  1 acatgtaatggtggtacatcttatctatttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24894508 acatgtaatggtggtacatcttatctatttgaacataatgatataggtggtacaatctaaggattttaatgaaagacaatttaatttaagcggaaaatag 24894607  T
Q  101 tgatcctattaaagaccaaacatggagtaaaataaagtgcatgtttttcttatttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaa 200  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  24894608 tgatcctattaaagaccgaacatggagtaaaataaagtgcat-tttttcttatttgaaaattgatgttcccacatcaaaggttgtaatgaaacaccacaa 24894706  T
Q  201 aattaccaatataaccttat 220  Q
    ||||||||||||||| ||||    
T  24894707 aattaccaatataactttat 24894726  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 47533704 - 47533765
Alignment:
Q  154 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    ||||||||||  ||||| |||||||||||||  | ||||||||||||| |||||||||||||    
T  47533704 ttgaaaattgtcgttcctacattaaaggttgttaggaaacaccacaaatttaccaatataac 47533765  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 53711869 - 53711808
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 214  Q
    |||||||||||||| || ||  ||||||||||| ||||||||||||||| ||||||| ||||    
T  53711869 tttgaaaattgatgctctcatcttaaaggttgctatgaaacaccacaaatttaccaacataa 53711808  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 37210215 - 37210278
Alignment:
Q  152 atttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  37210215 atttgaaaattgatgttcccacatcaaaggttgctaggaaacaccacgaaattaccaatataac 37210278  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 3256966 - 3257026
Alignment:
Q  157 aaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||||||||||| |||||||    
T  3256966 aaaattgttattcccacattaaaggttgctacgaaacaccacaaaattaccaacataacct 3257026  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 32978970 - 32979028
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 214  Q
    |||||||| ||||||||||| | ||||||| | ||||||||||||||||| ||||||||    
T  32978970 gaaaattgttgttcccacatcataggttgctaggaaacaccacaaaattatcaatataa 32979028  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 29927697 - 29927758
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||| ||| ||||||||||| ||||||||  | |||||||||| ||||||||||||||||||    
T  29927697 gaaatttgttgttcccacatcaaaggttgataggaaacaccacgaaattaccaatataacct 29927758  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 38342433 - 38342373
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||||||| ||||||||| | |||| |||| |||||||||||| ||||||||||||||||||    
T  38342433 gaaaattgttgttcccacgtcaaag-ttgctatgaaacaccacgaaattaccaatataacct 38342373  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 28814663 - 28814730
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttat 220  Q
    ||||||||||||||||||||  ||||||||||  |||||| ||||| ||||||  ||||||| |||||    
T  28814663 tttgaaaattgatgttcccaagttaaaggttgttatgaaataccacgaaattattaatataatcttat 28814730  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 1038296 - 1038356
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||    
T  1038296 tgaaaattgatgttcccacatcaaaggttgttatgaaacacaacaaaattaccaatataac 1038356  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32549587 - 32549528
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||    
T  32549587 gaaaattgatgttcccacatcaaaagttgctatgaaacaccacgaaattaccaatataac 32549528  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 20183029 - 20183088
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataac 215  Q
    |||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||    
T  20183029 gaaaattgatgttcccacgttaaaggttgctataaaacaccacaaaattatcaatataac 20183088  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 33487367 - 33487301
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataaccttatg 221  Q
    ||||||||||||||||| ||| |||| |||| |||||||||||| |||||| |||||||||| ||||    
T  33487367 tgaaaattgatgttcccgcatcaaagattgctatgaaacaccacgaaattatcaatataaccctatg 33487301  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 25244177 - 25244239
Alignment:
Q  155 tgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||| |||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||    
T  25244177 tgaagattgctgttcccacatcaaaggatgcaaggaaacaccagaaaaataccaatataacct 25244239  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 42082891 - 42082833
Alignment:
Q  156 gaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 214  Q
    |||||| | ||||||||||| | || |||| |||||||||||| |||||||||||||||    
T  42082891 gaaaatcgttgttcccacatcatagattgctatgaaacaccacgaaattaccaatataa 42082833  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40767267 - 40767210
Alignment:
Q  160 attgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    |||||||||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||    
T  40767267 attgatgttcccacatcaaagggtgctatgaaacaccagaaaaataccaatataacct 40767210  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 39043523 - 39043586
Alignment:
Q  154 ttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataacct 217  Q
    ||||||||| |||||||||||| ||| ||||| | ||||||||| ||||||||||| |||||||    
T  39043523 ttgaaaattaatgttcccacatcaaaagttgctaggaaacaccataaaattaccaaaataacct 39043586  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 9688397 - 9688336
Alignment:
Q  153 tttgaaaattgatgttcccacattaaaggttgcaatgaaacaccacaaaattaccaatataa 214  Q
    |||||||||||||||||||| || || ||| |  |||||||||||| ||||||| |||||||    
T  9688397 tttgaaaattgatgttcccatatgaatggtggatatgaaacaccacgaaattactaatataa 9688336  T

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