View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_3 (Length: 536)
Name: NF17885_low_3
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 521
Target Start/End: Original strand, 38225406 - 38225916
Alignment:
| Q |
11 |
cagagattatccaagtattaaagagaatggtctttgaagtctcttcaagtactttattggtggaaagatgtaaaatcaaggaaagaatgccaatgacgaa |
110 |
Q |
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| T |
38225406 |
cagagattatacaagtattaaagagaatggtctttgaagtctctttaagtactttattggtggaaagatgtaaaatcaaggaaagaatgccaatgacgaa |
38225505 |
T |
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| Q |
111 |
gagactttcttgacttaagatatctgcctcttttgatggaatagagtactccatcatctgcagaagtggtacgtgctgttagaactacaaaaattattga |
210 |
Q |
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| T |
38225506 |
gagactttcttgacttaagatatctgcctcttttgatggaatagagtactccatcatctgcagaagtggtacgtgctgttagaactacaaaaattattga |
38225605 |
T |
|
| Q |
211 |
ccgaatctccaaattttctagtaagattccctatgcttgctatggaattattgtggatatattgcagcatcagaacacaatatttgcattccacttcatc |
310 |
Q |
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| T |
38225606 |
ccgaatctccaaattttctagtgagattccctatgcttgctatggaattattgtggatatattgcagcatcagaacacaatatttgcattccacttcatc |
38225705 |
T |
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| Q |
311 |
tctacctattttatagtccacgattttttcctgtattttagattttgtcaatttagttccactaatcattagcgtaatccatctccatttgtttgtgacc |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38225706 |
tctacctattttatagtccacaattttttcctgtattttagattttgtcaatttagttccactaatcattagtgtaatccatctccatttgtttgtgacc |
38225805 |
T |
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| Q |
411 |
ccttatatctatttatatgtcatacagttcacaatgaacattgcgttctacatatcagtatgttttgccatatagactatggctttgccttgcctaaaat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225806 |
ccttatatctatttatatgtcatacagttcacaatgaacattgcgttctacatatcagtatgttttgccatatagactatggctttgccttgcctaaaat |
38225905 |
T |
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| Q |
511 |
atggatgttaa |
521 |
Q |
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| T |
38225906 |
atggatgttaa |
38225916 |
T |
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