View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_4 (Length: 504)
Name: NF17885_low_4
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 492
Target Start/End: Original strand, 49044350 - 49044828
Alignment:
| Q |
14 |
ctaacaacacgtgaatgagttacatgctacagcctctggctacatatgcattaatttatttattgagtgtgaaaggaggaaggcatagctttattagcta |
113 |
Q |
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| T |
49044350 |
ctaacaacacgtgaatgagttacatgctacagcctctggttacatatgtattaatttatttattgagtgtgaaaggaggaaggcatggctttattagcta |
49044449 |
T |
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| Q |
114 |
gcagattatttaagtattttgattttcttttccacattctaattatggtttagcttgatccaaagggaaatatcctattccctactacataacctaccgc |
213 |
Q |
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| T |
49044450 |
gcagattatttaagtattttgattttcttttccacattctaattatggtttagcttgatccaaagggaaatatcctattccctactacataacctaccgc |
49044549 |
T |
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| Q |
214 |
aaagataactttcaaatttcaatccatagatgcaggaagagcccctcaaattatagaatagaatggggatttcttacagttggtgaattaagctgaatga |
313 |
Q |
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| T |
49044550 |
aaacataactttcaaatttcaatccatagatgcaggaagagcccctcaaattatagaatagaatggggatttcttaccgttggtgaattaagctgaatga |
49044649 |
T |
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| Q |
314 |
ataatataacaacatgtgaattacatgttgtaggaattaggatgtagctcaccgacctcgttcaacagttctcaattttttactaatttagttgaccaca |
413 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49044650 |
atactataacaacatgtgaattacatgttgtaggaattaggatgtagctcaccgacctcgttcaacagttctcaattttttactaatttagttgaccaca |
49044749 |
T |
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| Q |
414 |
aggattcatttattcagagtcattggtcaacagaatgtgaaattaatggcacaattcattaattgggtatgctacccta |
492 |
Q |
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| T |
49044750 |
aggattcatttattcagagtcattggtcaacagaatgtgaaattaatggcacaattcattaattgggtatgctacccta |
49044828 |
T |
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