View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17885_low_5 (Length: 503)
Name: NF17885_low_5
Description: NF17885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17885_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 342 - 488
Target Start/End: Complemental strand, 37184847 - 37184701
Alignment:
| Q |
342 |
gtgtcattctcatgatcttctcctttttactcacacgggtagaaattattttaaggaaaatttcttcaatattgtaatacaaaccatatatgttaacatt |
441 |
Q |
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| T |
37184847 |
gtgtcattctcatgatcttctcctttttactcacacgggtagaaattattttaaggaaaatttcttcaatattgtaatacaaaccatatatgttaacatt |
37184748 |
T |
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| Q |
442 |
caatactgttggttgtttacaaagagaatgtacaatgacatgtttct |
488 |
Q |
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| T |
37184747 |
caatactgttggttgtttacaaagagaatgtacaatgacatgtttct |
37184701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 37184995 - 37184903
Alignment:
| Q |
198 |
catgaacttgaagatgatttcagtttgtgtggatatggagatttttatgatgattttgccttataaaaaggtagaatttatttaaaggaggga |
290 |
Q |
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| T |
37184995 |
catgaacttgatgatgatttcagtttgtgtggatatggagatttttataatgattttgccttataaaaagttagaatttatttaaaggaggga |
37184903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 37185179 - 37185110
Alignment:
| Q |
11 |
cagagaacatggacgaggatggaaacccttcccattctgagtcaacaaccaacaataacaaccaggtaaa |
80 |
Q |
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| T |
37185179 |
cagagaacatggacgaggatggcaacccttcccattctgagtcaacaaccaacaataacaaccaggtaaa |
37185110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 37187041 - 37186987
Alignment:
| Q |
198 |
catgaacttgaa-gatgatttcagtttgtgtggatatggagatttttatgatgat |
251 |
Q |
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| T |
37187041 |
catgaacttggatgataattttagtttgtgtggatatggagatttttatgatgat |
37186987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 37185093 - 37185065
Alignment:
| Q |
100 |
aagaaaaagaaacatgaacttggatgatg |
128 |
Q |
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| T |
37185093 |
aagaaaaagaaacatgaacttggatgatg |
37185065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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